Gene annotation
Transcriptome id Sobic.004G356400.1
Synonym Sb04g038290
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5RR25
Pfam PF11267
Panther DB PTHR35126 PTHR35126:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19900 : -
RAP-DB (Rice) LOC_Os02g58310.2 : expressed protein
MaizeGDB (Corn) Zm00025a022669
Brachypodium -
Barley HORVU6Hr1G094410.10 , HORVU6Hr1G094410.11 , HORVU6Hr1G094410.12 , HORVU6Hr1G094410.13 , HORVU6Hr1G094410.14 , HORVU6Hr1G094410.15 , HORVU6Hr1G094410.16 , HORVU6Hr1G094410.17 , HORVU6Hr1G094410.18 , HORVU6Hr1G094410.2 , HORVU6Hr1G094410.3 , HORVU6Hr1G094410.6 , HORVU6Hr1G094410.7 , HORVU6Hr1G094410.4 , HORVU6Hr1G094410.5 , HORVU6Hr1G094410.8 , HORVU6Hr1G094410.9
Wheat TraesCS6D02G401200 , TraesCS6A02G416000 , TraesCS6B02G473400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
2 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
3 Sobic.006G158100 tRNA-dihydrouridine synthase, putative, expressed K05543: tRNA-dihydrouridine synthase 2
4 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
5 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
6 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -
7 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
8 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
9 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
10 Sobic.004G027600 expressed protein -
11 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
12 Sobic.005G206300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATA15 protein, putative, expressed -
13 Sobic.007G136200 expressed protein -
14 Sobic.004G154200 expressed protein -
15 Sobic.005G231500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed -
16 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
17 Sobic.001G504400 expressed protein -
18 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
19 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -
20 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase


Gene co-expression network
sample Sobic004G356400 Sobic004G356400 Sobic001G017300 Sobic001G017300 Sobic004G356400--Sobic001G017300 Sobic005G101200 Sobic005G101200 Sobic004G356400--Sobic005G101200 Sobic006G158100 Sobic006G158100 Sobic004G356400--Sobic006G158100 Sobic003G185900 Sobic003G185900 Sobic004G356400--Sobic003G185900 Sobic007G105500 Sobic007G105500 Sobic004G356400--Sobic007G105500 Sobic001G303200 Sobic001G303200 Sobic004G356400--Sobic001G303200 Sobic009G237100 Sobic009G237100 Sobic004G356400--Sobic009G237100 Sobic004G189800 Sobic004G189800 Sobic004G356400--Sobic004G189800 Sobic001G258200 Sobic001G258200 Sobic004G356400--Sobic001G258200 Sobic001G017300--Sobic006G158100 Sobic001G017300--Sobic004G356400 Sobic006G093800 Sobic006G093800 Sobic001G017300--Sobic006G093800 Sobic010G249700 Sobic010G249700 Sobic001G017300--Sobic010G249700 Sobic007G136200 Sobic007G136200 Sobic001G017300--Sobic007G136200 Sobic003G276300 Sobic003G276300 Sobic001G017300--Sobic003G276300 Sobic001G017300--Sobic005G101200 Sobic001G169900 Sobic001G169900 Sobic001G017300--Sobic001G169900 Sobic010G002700 Sobic010G002700 Sobic001G017300--Sobic010G002700 Sobic005G101200--Sobic004G189800 Sobic005G068700 Sobic005G068700 Sobic005G101200--Sobic005G068700 Sobic002G404800 Sobic002G404800 Sobic005G101200--Sobic002G404800 Sobic005G101200--Sobic001G258200 Sobic009G038900 Sobic009G038900 Sobic005G101200--Sobic009G038900 Sobic005G101200--Sobic007G105500 Sobic005G101200--Sobic003G185900 Sobic010G085100 Sobic010G085100 Sobic005G101200--Sobic010G085100 Sobic004G281800 Sobic004G281800 Sobic005G101200--Sobic004G281800 Sobic006G158100--Sobic007G136200 Sobic006G158100--Sobic001G017300 Sobic006G158100--Sobic001G258200 Sobic001G504400 Sobic001G504400 Sobic006G158100--Sobic001G504400 Sobic003G094100 Sobic003G094100 Sobic006G158100--Sobic003G094100 Sobic010G043800 Sobic010G043800 Sobic006G158100--Sobic010G043800 Sobic010G067100 Sobic010G067100 Sobic006G158100--Sobic010G067100 Sobic006G158100--Sobic001G169900 Sobic006G158100--Sobic003G185900 Sobic008G033000 Sobic008G033000 Sobic003G185900--Sobic008G033000 Sobic003G185900--Sobic001G504400 Sobic003G185900--Sobic001G258200 Sobic003G185900--Sobic010G067100 Sobic003G185900--Sobic007G105500 Sobic004G215800 Sobic004G215800 Sobic003G185900--Sobic004G215800 Sobic003G185900--Sobic005G068700 Sobic009G038701 Sobic009G038701 Sobic003G185900--Sobic009G038701 Sobic003G036200 Sobic003G036200 Sobic003G185900--Sobic003G036200 Sobic007G105500--Sobic004G215800 Sobic007G105500--Sobic003G036200 Sobic007G105500--Sobic002G404800 Sobic007G105500--Sobic003G185900 Sobic003G367500 Sobic003G367500 Sobic007G105500--Sobic003G367500 Sobic007G105500--Sobic005G101200 Sobic009G256100 Sobic009G256100 Sobic007G105500--Sobic009G256100 Sobic007G105500--Sobic008G033000 Sobic007G105500--Sobic010G085100 Sobic001G283100 Sobic001G283100 Sobic001G303200--Sobic001G283100 Sobic002G382700 Sobic002G382700 Sobic001G303200--Sobic002G382700 Sobic001G333800 Sobic001G333800 Sobic001G303200--Sobic001G333800 Sobic001G207800 Sobic001G207800 Sobic001G303200--Sobic001G207800 Sobic006G102000 Sobic006G102000 Sobic001G303200--Sobic006G102000 Sobic007G108900 Sobic007G108900 Sobic001G303200--Sobic007G108900 Sobic006G221000 Sobic006G221000 Sobic001G303200--Sobic006G221000 Sobic006G090100 Sobic006G090100 Sobic001G303200--Sobic006G090100 Sobic001G303200--Sobic003G094100 Sobic007G009200 Sobic007G009200 Sobic009G237100--Sobic007G009200 Sobic006G207800 Sobic006G207800 Sobic009G237100--Sobic006G207800 Sobic006G238200 Sobic006G238200 Sobic009G237100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic009G237100--Sobic001G100000 Sobic001G491000 Sobic001G491000 Sobic009G237100--Sobic001G491000 Sobic002G275300 Sobic002G275300 Sobic009G237100--Sobic002G275300 Sobic010G035400 Sobic010G035400 Sobic009G237100--Sobic010G035400 Sobic001G102800 Sobic001G102800 Sobic009G237100--Sobic001G102800 Sobic010G181300 Sobic010G181300 Sobic009G237100--Sobic010G181300 Sobic004G189800--Sobic005G101200 Sobic004G189800--Sobic001G258200 Sobic004G027600 Sobic004G027600 Sobic004G189800--Sobic004G027600 Sobic004G189800--Sobic009G256100 Sobic004G189800--Sobic003G185900 Sobic004G189800--Sobic005G068700 Sobic004G189800--Sobic002G404800 Sobic004G189800--Sobic002G382700 Sobic004G189800--Sobic008G033000 Sobic001G258200--Sobic003G185900 Sobic001G258200--Sobic002G382700 Sobic008G129900 Sobic008G129900 Sobic001G258200--Sobic008G129900 Sobic001G258200--Sobic001G504400 Sobic001G258200--Sobic004G189800 Sobic001G258200--Sobic008G033000 Sobic002G206300 Sobic002G206300 Sobic001G258200--Sobic002G206300 Sobic001G359300 Sobic001G359300 Sobic001G258200--Sobic001G359300 Sobic001G258200--Sobic005G068700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.