Gene annotation
| Transcriptome id | Sobic.009G237100.1,Sobic.009G237100.2 |
|---|---|
| Synonym | BASS, Sb09g028950 |
| Functional annotation | - (PubMedID : 26976818) bile acid sodium symporter, putative, expressed |
| UniProt | A0A1B6PA32 , C5YVY8 |
| Pfam | PF01758 |
| Panther DB | PTHR18640 PTHR18640:SF9 |
| NCBI CDD | KOG4821; Predicted Na+-dependent cotransporter |
| KEGG Orthology | K14347; SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7 |
| Gene Ontology | GO:0016020; membrane |
Orthologs (automatic annotation)
| TAIR | AT3G56160 : Sodium Bile acid symporter family |
|---|---|
| RAP-DB (Rice) | LOC_Os02g32930.1 : bile acid sodium symporter, putative, expressed |
| MaizeGDB (Corn) | Zm00025a044623 , Zm00025a020538 |
| Brachypodium | - |
| Barley | HORVU3Hr1G030520.11 , HORVU3Hr1G030520.10 , HORVU3Hr1G030520.13 , HORVU3Hr1G030520.12 , HORVU3Hr1G030520.15 , HORVU3Hr1G030520.14 , HORVU4Hr1G050290.2 , HORVU4Hr1G050290.3 , HORVU4Hr1G050290.1 , HORVU4Hr1G050290.4 , HORVU3Hr1G030520.5 , HORVU3Hr1G030520.4 , HORVU3Hr1G030520.7 , HORVU3Hr1G030520.6 , HORVU3Hr1G030520.3 , HORVU3Hr1G030520.2 , HORVU3Hr1G030520.9 , HORVU3Hr1G030520.8 |
| Wheat | TraesCS3A02G150200 , TraesCS3A02G150200 , TraesCS3A02G150200 , TraesCS3A02G150200 , TraesCS3B02G177200 , TraesCS3D02G158100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G009200 | adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed | K00939: adk, adenylate kinase |
| 2 | Sobic.006G207800 | Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed | - |
| 3 | Sobic.006G238200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 4 | Sobic.001G100000 | glucose-1-phosphate adenylyltransferase large subunit, putative, expressed | K00975: glucose-1-phosphate adenylyltransferase |
| 5 | Sobic.001G491000 | ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed | K01783: rpe, ribulose-phosphate 3-epimerase |
| 6 | Sobic.002G275300 | deoxyribodipyrimidine photolyase family protein, expressed | - |
| 7 | Sobic.010G035400 | expressed protein | - |
| 8 | Sobic.001G102800 | expressed protein | - |
| 9 | Sobic.010G181300 | SOUL heme-binding protein, putative, expressed | - |
| 10 | Sobic.002G220900 | expressed protein | - |
| 11 | Sobic.009G237000 | OsDegp9 - Putative Deg protease homologue, expressed | - |
| 12 | Sobic.004G331700 | aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed | K00811: aspartate aminotransferase, chloroplastic |
| 13 | Sobic.004G027600 | expressed protein | - |
| 14 | Sobic.007G103400 | expressed protein | - |
| 15 | Sobic.003G398800 | expressed protein | - |
| 16 | Sobic.007G225500 | expressed protein | - |
| 17 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 18 | Sobic.003G024300 | glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed | K05941: glutathione gamma-glutamylcysteinyltransferase |
| 19 | Sobic.006G102000 | PAP fibrillin family domain containing protein, expressed | - |
| 20 | Sobic.007G140800 | Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed | K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase) |
Gene co-expression network
Octagon: transcription factors
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