Gene annotation
Transcriptome id Sobic.003G036200.1
Synonym nadpme-IVc;nadpme-IVc;NADP-ME;NADP-ME4;NADP-ME2/3/4, NADP-ME4, ATNADP-ME4, Sb03g003230
Functional annotation NADP-ME (PubMedID : 19549309)
"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)" (PubMedID : 23228551)
NADP-malic enzyme 4 (PubMedID : 26465154)
NADP-malic enzyme (PubMedID : 26904072)
- (PubMedID : 26976818)
NADP-dependent malic enzyme (PubMedID : 27016024)
NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
UniProt A0A2P1GJR1 , Q84LQ5
Pfam PF00390 PF03949
Panther DB PTHR23406 PTHR23406:SF29
NCBI CDD -
KEGG Orthology K00029; E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
Gene Ontology GO:0004471; malate dehydrogenase (decarboxylating) (NAD+) activity


Orthologs (automatic annotation)
TAIR AT1G79750 : NADP-malic enzyme 4
RAP-DB (Rice) LOC_Os01g09320.1 : NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a023064 , Zm00025a043399 , Zm00025a043397 , Zm00025a040068
Brachypodium KQK03103 , KQK03102
Barley HORVU1Hr1G028030.30 , HORVU3Hr1G019790.19 , HORVU1Hr1G028030.8 , HORVU3Hr1G019790.18 , HORVU3Hr1G019790.9 , HORVU3Hr1G019790.8 , HORVU3Hr1G019790.15 , HORVU3Hr1G019790.14 , HORVU3Hr1G019790.7 , HORVU3Hr1G019790.6 , HORVU3Hr1G019790.5 , HORVU3Hr1G019790.4 , HORVU3Hr1G019790.3 , HORVU3Hr1G019790.2 , HORVU3Hr1G019790.1 , HORVU3Hr1G019790.16 , HORVU1Hr1G028030.3 , HORVU1Hr1G028030.4 , HORVU1Hr1G028030.5 , HORVU1Hr1G028030.6 , HORVU1Hr1G028030.7 , HORVU3Hr1G019790.17 , HORVU3Hr1G019790.13 , HORVU3Hr1G019790.12 , HORVU3Hr1G019790.11 , HORVU3Hr1G019790.10 , HORVU1Hr1G028030.13 , HORVU1Hr1G028030.16 , HORVU1Hr1G028030.17 , HORVU1Hr1G028030.14 , HORVU1Hr1G028030.15 , HORVU1Hr1G028030.18 , HORVU1Hr1G028030.19 , HORVU1Hr1G028030.23 , HORVU3Hr1G019790.20 , HORVU3Hr1G019790.21 , HORVU1Hr1G028030.29 , HORVU1Hr1G028030.28 , HORVU1Hr1G028030.22 , HORVU1Hr1G028030.21 , HORVU1Hr1G028030.20 , HORVU1Hr1G028030.27 , HORVU1Hr1G028030.26 , HORVU1Hr1G028030.25
Wheat TraesCS3D02G110700 , TraesCS3B02G128000 , TraesCS3B02G128000 , TraesCS3D02G110700 , TraesCS3A02G108900 , TraesCS3A02G108900 , TraesCS1D02G123400 , TraesCS1B02G141700 , TraesCS1D02G123400 , TraesCS1B02G141700
Populus PNT55387 , PNT55389 , PNT55388 , PNT55390 , PNT55391 , PNT55392


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cDNA sequences
Sobic.003G036200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
2 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
3 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
4 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
5 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
6 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
7 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
8 Sobic.009G256100 expressed protein -
9 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
10 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
11 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
12 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
13 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
14 Sobic.006G093100 ferric-chelate reductase, putative, expressed -
15 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
16 Sobic.008G117000 expressed protein K13457: RPM1, disease resistance protein RPM1
17 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
18 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
19 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
20 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G036200 Sobic003G036200 Sobic007G105500 Sobic007G105500 Sobic003G036200--Sobic007G105500 Sobic004G215800 Sobic004G215800 Sobic003G036200--Sobic004G215800 Sobic002G390100 Sobic002G390100 Sobic003G036200--Sobic002G390100 Sobic002G404800 Sobic002G404800 Sobic003G036200--Sobic002G404800 Sobic003G185900 Sobic003G185900 Sobic003G036200--Sobic003G185900 Sobic005G101200 Sobic005G101200 Sobic003G036200--Sobic005G101200 Sobic010G085100 Sobic010G085100 Sobic003G036200--Sobic010G085100 Sobic009G256100 Sobic009G256100 Sobic003G036200--Sobic009G256100 Sobic008G033200 Sobic008G033200 Sobic003G036200--Sobic008G033200 Sobic007G105500--Sobic004G215800 Sobic007G105500--Sobic003G036200 Sobic007G105500--Sobic002G404800 Sobic007G105500--Sobic003G185900 Sobic003G367500 Sobic003G367500 Sobic007G105500--Sobic003G367500 Sobic007G105500--Sobic005G101200 Sobic007G105500--Sobic009G256100 Sobic008G033000 Sobic008G033000 Sobic007G105500--Sobic008G033000 Sobic007G105500--Sobic010G085100 Sobic004G215800--Sobic007G105500 Sobic004G215800--Sobic003G036200 Sobic004G215800--Sobic003G185900 Sobic004G215800--Sobic003G367500 Sobic004G215800--Sobic002G404800 Sobic004G215800--Sobic008G033000 Sobic004G215800--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G215800--Sobic003G097600 Sobic004G112100 Sobic004G112100 Sobic004G215800--Sobic004G112100 Sobic002G390100--Sobic003G036200 Sobic002G390100--Sobic002G404800 Sobic002G390100--Sobic009G256100 Sobic005G068700 Sobic005G068700 Sobic002G390100--Sobic005G068700 Sobic002G390100--Sobic004G215800 Sobic002G390100--Sobic007G105500 Sobic003G042900 Sobic003G042900 Sobic002G390100--Sobic003G042900 Sobic010G104800 Sobic010G104800 Sobic002G390100--Sobic010G104800 Sobic001G073300 Sobic001G073300 Sobic002G390100--Sobic001G073300 Sobic002G404800--Sobic007G105500 Sobic002G404800--Sobic003G036200 Sobic002G404800--Sobic004G215800 Sobic002G404800--Sobic005G101200 Sobic002G404800--Sobic002G390100 Sobic002G404800--Sobic009G256100 Sobic002G404800--Sobic003G185900 Sobic002G404800--Sobic008G033000 Sobic002G404800--Sobic004G112100 Sobic003G185900--Sobic008G033000 Sobic001G504400 Sobic001G504400 Sobic003G185900--Sobic001G504400 Sobic001G258200 Sobic001G258200 Sobic003G185900--Sobic001G258200 Sobic010G067100 Sobic010G067100 Sobic003G185900--Sobic010G067100 Sobic003G185900--Sobic007G105500 Sobic003G185900--Sobic004G215800 Sobic003G185900--Sobic005G068700 Sobic009G038701 Sobic009G038701 Sobic003G185900--Sobic009G038701 Sobic003G185900--Sobic003G036200 Sobic004G189800 Sobic004G189800 Sobic005G101200--Sobic004G189800 Sobic005G101200--Sobic005G068700 Sobic005G101200--Sobic002G404800 Sobic005G101200--Sobic001G258200 Sobic009G038900 Sobic009G038900 Sobic005G101200--Sobic009G038900 Sobic005G101200--Sobic007G105500 Sobic005G101200--Sobic003G185900 Sobic005G101200--Sobic010G085100 Sobic004G281800 Sobic004G281800 Sobic005G101200--Sobic004G281800 Sobic010G085100--Sobic005G101200 Sobic010G085100--Sobic003G185900 Sobic010G085100--Sobic007G105500 Sobic010G085100--Sobic002G404800 Sobic010G085100--Sobic004G215800 Sobic008G140200 Sobic008G140200 Sobic010G085100--Sobic008G140200 Sobic010G085100--Sobic003G036200 Sobic010G085100--Sobic008G033000 Sobic004G154200 Sobic004G154200 Sobic010G085100--Sobic004G154200 Sobic009G256100--Sobic010G104800 Sobic006G153400 Sobic006G153400 Sobic009G256100--Sobic006G153400 Sobic009G256100--Sobic002G390100 Sobic007G058100 Sobic007G058100 Sobic009G256100--Sobic007G058100 Sobic009G256100--Sobic007G105500 Sobic009G256100--Sobic002G404800 Sobic009G256100--Sobic003G185900 Sobic009G256100--Sobic004G215800 Sobic008G129900 Sobic008G129900 Sobic009G256100--Sobic008G129900 Sobic008G033200--Sobic003G036200 Sobic002G324500 Sobic002G324500 Sobic008G033200--Sobic002G324500 Sobic008G033200--Sobic004G215800 Sobic006G093100 Sobic006G093100 Sobic008G033200--Sobic006G093100 Sobic006G120500 Sobic006G120500 Sobic008G033200--Sobic006G120500 Sobic008G033200--Sobic002G390100 Sobic008G117000 Sobic008G117000 Sobic008G033200--Sobic008G117000 Sobic008G033200--Sobic007G105500 Sobic008G033200--Sobic003G185900
Octagon: transcription factors


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