Gene annotation
Transcriptome id Sobic.009G242100.1,Sobic.009G242100.3,Sobic.009G242100.2
Synonym Sb09g029360, CHUP1
Functional annotation chloroplast unusual positioning protein, putative, expressed
UniProt A0A1B6PA74 , A0A1B6PA87
Pfam -
Panther DB PTHR31342 PTHR31342:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25690 : Hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os12g01449.1,LOC_Os11g01439.1 : chloroplast unusual positioning protein, putative, expressed
MaizeGDB (Corn) Zm00025a044675
Brachypodium KQK04739
Barley HORVU1Hr1G090990.29 , HORVU1Hr1G090990.28 , HORVU1Hr1G090990.23 , HORVU1Hr1G090990.22 , HORVU1Hr1G090990.21 , HORVU1Hr1G090990.27 , HORVU1Hr1G090990.26 , HORVU1Hr1G090990.25 , HORVU1Hr1G090990.24 , HORVU1Hr1G090990.8 , HORVU1Hr1G090990.9 , HORVU1Hr1G090990.1 , HORVU1Hr1G090990.2 , HORVU1Hr1G090990.4 , HORVU1Hr1G090990.5 , HORVU1Hr1G090990.6 , HORVU1Hr1G090990.7 , HORVU1Hr1G090990.12 , HORVU1Hr1G090990.13 , HORVU1Hr1G090990.10 , HORVU1Hr1G090990.11 , HORVU1Hr1G090990.16 , HORVU1Hr1G090990.17 , HORVU1Hr1G090990.14 , HORVU1Hr1G090990.15 , HORVU1Hr1G090990.18 , HORVU1Hr1G090990.19
Wheat TraesCS1A02G415200 , TraesCS1A02G415200 , TraesCS1A02G415200 , TraesCS1D02G422700 , TraesCS1B02G445200 , TraesCS1B02G445200 , TraesCS1D02G422700 , TraesCS1D02G422700
Populus -


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cDNA sequences
Sobic.009G242100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G117000 expressed protein K13457: RPM1, disease resistance protein RPM1
2 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
3 Sobic.003G342100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed -
4 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
5 Sobic.002G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
7 Sobic.003G332700 Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
8 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
9 Sobic.010G255300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
10 Sobic.001G468700 expressed protein -
11 Sobic.003G004200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed -
12 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
13 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
14 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
15 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
16 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
17 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
18 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
19 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
20 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -


Gene co-expression network
sample Sobic009G242100 Sobic009G242100 Sobic008G117000 Sobic008G117000 Sobic009G242100--Sobic008G117000 Sobic003G036200 Sobic003G036200 Sobic009G242100--Sobic003G036200 Sobic003G342100 Sobic003G342100 Sobic009G242100--Sobic003G342100 Sobic001G073900 Sobic001G073900 Sobic009G242100--Sobic001G073900 Sobic002G049600 Sobic002G049600 Sobic009G242100--Sobic002G049600 Sobic007G105500 Sobic007G105500 Sobic009G242100--Sobic007G105500 Sobic003G332700 Sobic003G332700 Sobic009G242100--Sobic003G332700 Sobic001G134100 Sobic001G134100 Sobic009G242100--Sobic001G134100 Sobic010G255300 Sobic010G255300 Sobic009G242100--Sobic010G255300 Sobic002G324500 Sobic002G324500 Sobic008G117000--Sobic002G324500 Sobic008G117000--Sobic001G073900 Sobic008G117000--Sobic003G036200 Sobic008G117000--Sobic001G134100 Sobic004G215800 Sobic004G215800 Sobic008G117000--Sobic004G215800 Sobic003G367500 Sobic003G367500 Sobic008G117000--Sobic003G367500 Sobic008G117000--Sobic007G105500 Sobic008G117000--Sobic003G332700 Sobic003G185900 Sobic003G185900 Sobic008G117000--Sobic003G185900 Sobic003G036200--Sobic007G105500 Sobic003G036200--Sobic004G215800 Sobic002G390100 Sobic002G390100 Sobic003G036200--Sobic002G390100 Sobic002G404800 Sobic002G404800 Sobic003G036200--Sobic002G404800 Sobic003G036200--Sobic003G185900 Sobic005G101200 Sobic005G101200 Sobic003G036200--Sobic005G101200 Sobic010G085100 Sobic010G085100 Sobic003G036200--Sobic010G085100 Sobic009G256100 Sobic009G256100 Sobic003G036200--Sobic009G256100 Sobic008G033200 Sobic008G033200 Sobic003G036200--Sobic008G033200 Sobic003G342100--Sobic001G073900 Sobic001G062900 Sobic001G062900 Sobic003G342100--Sobic001G062900 Sobic003G342100--Sobic003G332700 Sobic003G342100--Sobic009G242100 Sobic005G045000 Sobic005G045000 Sobic003G342100--Sobic005G045000 Sobic003G426700 Sobic003G426700 Sobic003G342100--Sobic003G426700 Sobic001G531500 Sobic001G531500 Sobic003G342100--Sobic001G531500 Sobic006G064100 Sobic006G064100 Sobic003G342100--Sobic006G064100 Sobic003G342100--Sobic002G049600 Sobic001G073900--Sobic003G332700 Sobic008G001900 Sobic008G001900 Sobic001G073900--Sobic008G001900 Sobic001G073900--Sobic008G117000 Sobic001G073900--Sobic003G342100 Sobic001G065600 Sobic001G065600 Sobic001G073900--Sobic001G065600 Sobic001G073900--Sobic001G531500 Sobic005G001700 Sobic005G001700 Sobic001G073900--Sobic005G001700 Sobic004G235600 Sobic004G235600 Sobic001G073900--Sobic004G235600 Sobic001G073900--Sobic002G049600 Sobic002G049600--Sobic001G073900 Sobic002G049600--Sobic008G033200 Sobic002G049600--Sobic008G117000 Sobic002G049600--Sobic003G036200 Sobic002G049600--Sobic003G332700 Sobic002G049600--Sobic003G426700 Sobic001G261408 Sobic001G261408 Sobic002G049600--Sobic001G261408 Sobic002G049600--Sobic009G242100 Sobic002G049600--Sobic003G342100 Sobic007G105500--Sobic004G215800 Sobic007G105500--Sobic003G036200 Sobic007G105500--Sobic002G404800 Sobic007G105500--Sobic003G185900 Sobic007G105500--Sobic003G367500 Sobic007G105500--Sobic005G101200 Sobic007G105500--Sobic009G256100 Sobic008G033000 Sobic008G033000 Sobic007G105500--Sobic008G033000 Sobic007G105500--Sobic010G085100 Sobic003G332700--Sobic001G073900 Sobic003G332700--Sobic008G001900 Sobic003G332700--Sobic008G117000 Sobic001G530900 Sobic001G530900 Sobic003G332700--Sobic001G530900 Sobic003G332700--Sobic004G235600 Sobic003G332700--Sobic001G531500 Sobic003G442700 Sobic003G442700 Sobic003G332700--Sobic003G442700 Sobic003G332700--Sobic010G085100 Sobic005G118400 Sobic005G118400 Sobic003G332700--Sobic005G118400 Sobic001G134100--Sobic003G367500 Sobic001G329400 Sobic001G329400 Sobic001G134100--Sobic001G329400 Sobic005G231500 Sobic005G231500 Sobic001G134100--Sobic005G231500 Sobic001G134100--Sobic007G105500 Sobic004G154200 Sobic004G154200 Sobic001G134100--Sobic004G154200 Sobic001G134100--Sobic010G085100 Sobic001G134100--Sobic008G117000 Sobic010G039500 Sobic010G039500 Sobic001G134100--Sobic010G039500 Sobic001G134100--Sobic004G215800 Sobic010G255300--Sobic007G105500 Sobic010G249700 Sobic010G249700 Sobic010G255300--Sobic010G249700 Sobic009G015100 Sobic009G015100 Sobic010G255300--Sobic009G015100 Sobic010G255300--Sobic005G101200 Sobic010G255300--Sobic003G367500 Sobic010G255300--Sobic002G404800 Sobic005G206300 Sobic005G206300 Sobic010G255300--Sobic005G206300 Sobic004G356400 Sobic004G356400 Sobic010G255300--Sobic004G356400 Sobic010G255300--Sobic003G036200
Octagon: transcription factors


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