Gene annotation
| Transcriptome id | Sobic.002G049600.1 |
|---|---|
| Synonym | Sb02g004150 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) expressed protein |
| UniProt | C5XAF0 |
| Pfam | - |
| Panther DB | PTHR33059 PTHR33059:SF26 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G22550 : Protein of unknown function (DUF581) |
|---|---|
| RAP-DB (Rice) | LOC_Os07g07900.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a045134 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.002G049600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G073900 | lactate/malate dehydrogenase, putative, expressed | K00026: malate dehydrogenase |
| 2 | Sobic.008G033200 | stem-specific protein TSJT1, putative, expressed | - |
| 3 | Sobic.008G117000 | expressed protein | K13457: RPM1, disease resistance protein RPM1 |
| 4 | Sobic.003G036200 | NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 5 | Sobic.003G332700 | Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed | K01188: beta-glucosidase |
| 6 | Sobic.003G426700 | expressed protein | - |
| 7 | Sobic.001G261408 | - | - |
| 8 | Sobic.009G242100 | chloroplast unusual positioning protein, putative, expressed | - |
| 9 | Sobic.003G342100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed | - |
| 10 | Sobic.005G001700 | mitochondrial substrate carrier family protein, putative, expressed | - |
| 11 | Sobic.004G235600 | mTERF family protein, expressed | K15032: mTERF domain-containing protein, mitochondrial |
| 12 | Sobic.002G314400 | peptidase, M24 family protein, putative, expressed | K01265: methionyl aminopeptidase |
| 13 | Sobic.006G093100 | ferric-chelate reductase, putative, expressed | - |
| 14 | Sobic.002G390100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit |
| 15 | Sobic.008G047000 | actin, putative, expressed | K10355: actin, other eukaryote |
| 16 | Sobic.006G260800 | phosphatidate cytidylyltransferase, putative, expressed | K18678: phytol kinase |
| 17 | Sobic.001G105200 | - | K14810: DDX56, ATP-dependent RNA helicase DDX56/DBP9 |
| 18 | Sobic.001G097100 | -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed | K00600: glyA, glycine hydroxymethyltransferase |
| 19 | Sobic.009G140000 | MLO domain containing protein, putative, expressed | K08472: mlo protein |
| 20 | Sobic.001G483300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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