Gene annotation
Transcriptome id Sobic.008G047000.1,Sobic.008G047000.2
Synonym ACT7, Sb08g003970
Functional annotation actin, putative, expressed
UniProt A0A1B6PBJ7
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF200
NCBI CDD -
KEGG Orthology K10355; actin, other eukaryote
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09810 : actin 7
RAP-DB (Rice) LOC_Os11g06390.2,LOC_Os11g06390.5 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a040977 , Zm00025a052678 , Zm00025a039570 , Zm00025a016937 , Zm00025a012921 , Zm00025a007893 , Zm00025a011910 , Zm00025a034168 , Zm00025a038281 , Zm00025a038282 , Zm00025a026721
Brachypodium PNT73248 , KQK13511 , KQJ85561 , KQK10759 , KQJ92134 , KQK08099
Barley HORVU3Hr1G083380.3 , HORVU3Hr1G083380.2 , HORVU3Hr1G083380.1 , HORVU3Hr1G083380.6 , HORVU3Hr1G083380.5 , HORVU3Hr1G083380.4 , HORVU4Hr1G008310.6 , HORVU4Hr1G008310.8 , HORVU5Hr1G039850.7 , HORVU1Hr1G047440.6 , HORVU1Hr1G047440.7 , HORVU1Hr1G047440.4 , HORVU1Hr1G047440.5 , HORVU1Hr1G047440.2 , HORVU1Hr1G047440.3 , HORVU1Hr1G047440.1 , HORVU5Hr1G039850.8 , HORVU4Hr1G008310.7 , HORVU4Hr1G008310.4 , HORVU4Hr1G008310.5 , HORVU4Hr1G008310.2 , HORVU4Hr1G008310.3 , HORVU4Hr1G008310.1 , HORVU5Hr1G039850.1 , HORVU5Hr1G039850.2 , HORVU5Hr1G039850.3 , HORVU5Hr1G039850.4 , HORVU5Hr1G039850.5 , HORVU5Hr1G039850.6 , HORVU4Hr1G008310.9 , HORVU5Hr1G000180.4 , HORVU5Hr1G000180.2 , HORVU5Hr1G000180.3 , HORVU5Hr1G000180.1 , HORVU5Hr1G117900.5 , HORVU5Hr1G117900.4 , HORVU5Hr1G117900.1 , HORVU5Hr1G117900.3 , HORVU5Hr1G117900.2 , HORVU1Hr1G002840.1 , HORVU1Hr1G002840.3 , HORVU1Hr1G002840.2 , HORVU1Hr1G002840.5 , HORVU1Hr1G002840.4 , HORVU1Hr1G002840.7 , HORVU1Hr1G002840.6
Wheat TraesCS5B02G124100 , TraesCS3B02G410000 , TraesCS3B02G410000 , TraesCS5A02G000400 , TraesCS1A02G179000 , TraesCS4B02G050600 , TraesCS1A02G179000 , TraesCS4B02G050600 , TraesCS4B02G050600 , TraesCS1A02G020500 , TraesCS1A02G020500 , TraesCS4A02G356100 , TraesCS4A02G356100 , TraesCS5D02G000400 , TraesCS4D02G050800 , TraesCS5D02G516200 , TraesCS4A02G264400 , TraesCS4A02G264400 , TraesCS4A02G264400 , TraesCS3A02G377300 , TraesCS1D02G177400 , TraesCS5A02G124300 , TraesCS5A02G124300 , TraesCS1D02G020000 , TraesCS5D02G132200 , TraesCS1B02G024500 , TraesCS4D02G050800 , TraesCS1B02G201400 , TraesCS3D02G370400 , TraesCS3D02G370400 , TraesCS3D02G370400 , TraesCS5B02G516100
Populus PNT57598 , PNS97854 , PNS89800 , PNT57597 , PNS89844 , PNT57599 , PNT57600 , PNT57601 , PNT57602 , PNT57603 , PNS97853 , PNT32494 , PNT32495


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cDNA sequences
Sobic.008G047000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
2 Sobic.004G317500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pathogenesis-related Bet v I family protein, putative, expressed -
3 Sobic.004G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
4 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
5 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
6 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
7 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
8 Sobic.001G425150 - -
9 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
10 Sobic.008G140200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.002G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.008G117000 expressed protein K13457: RPM1, disease resistance protein RPM1
13 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
14 Sobic.001G097100 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
15 Sobic.004G343500 OsCttP2 - Putative C-terminal processing peptidase homologue, expressed -
16 Sobic.001G305600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
17 Sobic.003G342100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed -
18 Sobic.004G270600 MYB family transcription factor, putative, expressed -
19 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
20 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase


Gene co-expression network
sample Sobic008G047000 Sobic008G047000 Sobic001G134100 Sobic001G134100 Sobic008G047000--Sobic001G134100 Sobic004G317500 Sobic004G317500 Sobic008G047000--Sobic004G317500 Sobic004G347800 Sobic004G347800 Sobic008G047000--Sobic004G347800 Sobic010G085100 Sobic010G085100 Sobic008G047000--Sobic010G085100 Sobic006G064100 Sobic006G064100 Sobic008G047000--Sobic006G064100 Sobic001G073900 Sobic001G073900 Sobic008G047000--Sobic001G073900 Sobic006G120500 Sobic006G120500 Sobic008G047000--Sobic006G120500 Sobic001G425150 Sobic001G425150 Sobic008G047000--Sobic001G425150 Sobic006G093800 Sobic006G093800 Sobic008G047000--Sobic006G093800 Sobic003G367500 Sobic003G367500 Sobic001G134100--Sobic003G367500 Sobic001G329400 Sobic001G329400 Sobic001G134100--Sobic001G329400 Sobic005G231500 Sobic005G231500 Sobic001G134100--Sobic005G231500 Sobic007G105500 Sobic007G105500 Sobic001G134100--Sobic007G105500 Sobic004G154200 Sobic004G154200 Sobic001G134100--Sobic004G154200 Sobic001G134100--Sobic010G085100 Sobic008G117000 Sobic008G117000 Sobic001G134100--Sobic008G117000 Sobic010G039500 Sobic010G039500 Sobic001G134100--Sobic010G039500 Sobic004G215800 Sobic004G215800 Sobic001G134100--Sobic004G215800 Sobic004G317500--Sobic006G120500 Sobic010G251700 Sobic010G251700 Sobic004G317500--Sobic010G251700 Sobic004G317500--Sobic006G064100 Sobic004G027600 Sobic004G027600 Sobic004G317500--Sobic004G027600 Sobic004G317500--Sobic008G047000 Sobic002G324500 Sobic002G324500 Sobic004G317500--Sobic002G324500 Sobic002G403600 Sobic002G403600 Sobic004G317500--Sobic002G403600 Sobic004G112100 Sobic004G112100 Sobic004G317500--Sobic004G112100 Sobic002G404800 Sobic002G404800 Sobic004G317500--Sobic002G404800 Sobic010G176200 Sobic010G176200 Sobic004G347800--Sobic010G176200 Sobic003G229300 Sobic003G229300 Sobic004G347800--Sobic003G229300 Sobic001G305600 Sobic001G305600 Sobic004G347800--Sobic001G305600 Sobic008G130000 Sobic008G130000 Sobic004G347800--Sobic008G130000 Sobic004G356400 Sobic004G356400 Sobic004G347800--Sobic004G356400 Sobic005G045000 Sobic005G045000 Sobic004G347800--Sobic005G045000 Sobic003G313300 Sobic003G313300 Sobic004G347800--Sobic003G313300 Sobic003G021100 Sobic003G021100 Sobic004G347800--Sobic003G021100 Sobic004G347800--Sobic006G093800 Sobic005G101200 Sobic005G101200 Sobic010G085100--Sobic005G101200 Sobic003G185900 Sobic003G185900 Sobic010G085100--Sobic003G185900 Sobic010G085100--Sobic007G105500 Sobic010G085100--Sobic002G404800 Sobic010G085100--Sobic004G215800 Sobic008G140200 Sobic008G140200 Sobic010G085100--Sobic008G140200 Sobic003G036200 Sobic003G036200 Sobic010G085100--Sobic003G036200 Sobic008G033000 Sobic008G033000 Sobic010G085100--Sobic008G033000 Sobic010G085100--Sobic004G154200 Sobic010G205100 Sobic010G205100 Sobic006G064100--Sobic010G205100 Sobic001G531500 Sobic001G531500 Sobic006G064100--Sobic001G531500 Sobic006G064100--Sobic002G403600 Sobic006G064100--Sobic001G073900 Sobic006G064100--Sobic006G120500 Sobic006G064100--Sobic004G317500 Sobic006G064100--Sobic001G305600 Sobic006G064100--Sobic003G036200 Sobic006G064100--Sobic010G085100 Sobic003G332700 Sobic003G332700 Sobic001G073900--Sobic003G332700 Sobic008G001900 Sobic008G001900 Sobic001G073900--Sobic008G001900 Sobic001G073900--Sobic008G117000 Sobic003G342100 Sobic003G342100 Sobic001G073900--Sobic003G342100 Sobic001G065600 Sobic001G065600 Sobic001G073900--Sobic001G065600 Sobic001G073900--Sobic001G531500 Sobic005G001700 Sobic005G001700 Sobic001G073900--Sobic005G001700 Sobic004G235600 Sobic004G235600 Sobic001G073900--Sobic004G235600 Sobic002G049600 Sobic002G049600 Sobic001G073900--Sobic002G049600 Sobic006G120500--Sobic004G317500 Sobic008G033200 Sobic008G033200 Sobic006G120500--Sobic008G033200 Sobic006G120500--Sobic002G324500 Sobic006G120500--Sobic005G001700 Sobic006G120500--Sobic004G027600 Sobic006G120500--Sobic002G403600 Sobic006G120500--Sobic003G036200 Sobic006G120500--Sobic006G064100 Sobic006G120500--Sobic010G085100 Sobic001G425150--Sobic008G047000 Sobic006G185100 Sobic006G185100 Sobic001G425150--Sobic006G185100 Sobic004G137801 Sobic004G137801 Sobic001G425150--Sobic004G137801 Sobic002G091600 Sobic002G091600 Sobic001G425150--Sobic002G091600 Sobic002G309900 Sobic002G309900 Sobic001G425150--Sobic002G309900 Sobic001G097100 Sobic001G097100 Sobic001G425150--Sobic001G097100 Sobic004G070700 Sobic004G070700 Sobic001G425150--Sobic004G070700 Sobic008G070800 Sobic008G070800 Sobic001G425150--Sobic008G070800 Sobic001G257700 Sobic001G257700 Sobic001G425150--Sobic001G257700 Sobic001G017300 Sobic001G017300 Sobic006G093800--Sobic001G017300 Sobic010G249700 Sobic010G249700 Sobic006G093800--Sobic010G249700 Sobic006G093800--Sobic004G356400 Sobic006G093800--Sobic001G134100 Sobic006G093800--Sobic005G101200 Sobic006G093800--Sobic010G085100 Sobic004G189800 Sobic004G189800 Sobic006G093800--Sobic004G189800 Sobic006G093800--Sobic004G027600 Sobic007G136200 Sobic007G136200 Sobic006G093800--Sobic007G136200
Octagon: transcription factors


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