Gene annotation
Transcriptome id Sobic.004G347800.6,Sobic.004G347800.3,Sobic.004G347800.5,Sobic.004G347800.1,Sobic.004G347800.2
Synonym Sb04g037440
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OTU-like cysteine protease family protein, putative, expressed
UniProt A0A194YT09 , A0A194YT11 , C5XVY6
Pfam PF02338
Panther DB PTHR12419 PTHR12419:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04250 : Cysteine proteinases superfamily protein
RAP-DB (Rice) LOC_Os02g57410.5,LOC_Os02g57410.10,LOC_Os02g57410.6 : OTU-like cysteine protease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022622
Brachypodium KQK01391
Barley HORVU6Hr1G091430.4 , HORVU6Hr1G091430.3 , HORVU6Hr1G091430.2 , HORVU6Hr1G091430.1 , HORVU6Hr1G091360.3 , HORVU6Hr1G091360.2 , HORVU6Hr1G091360.1 , HORVU6Hr1G091360.7 , HORVU6Hr1G091360.6 , HORVU6Hr1G091360.5 , HORVU6Hr1G091360.4 , HORVU6Hr1G091360.9 , HORVU6Hr1G091360.8
Wheat TraesCS6B02G434700 , TraesCS6A02G394800 , TraesCS6D02G380100 , TraesCS6D02G380100 , TraesCS6D02G380100 , TraesCS6D02G380100 , TraesCS6D02G380100 , TraesCS6D02G380100 , TraesCS6D02G380100 , TraesCS6A02G394800 , TraesCS6B02G434700 , TraesCS6A02G394800 , TraesCS6B02G434700 , TraesCS6B02G434700 , TraesCS6B02G434700
Populus -


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cDNA sequences
Sobic.004G347800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
3 Sobic.001G305600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
4 Sobic.008G130000 PPR repeat domain containing protein, putative, expressed -
5 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.005G045000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
7 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
8 Sobic.003G021100 expressed protein -
9 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
10 Sobic.007G047400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@MYB family transcription factor, putative, expressed K12133: MYB-related transcription factor LHY
11 Sobic.008G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
12 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
13 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
14 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
15 Sobic.008G047000 actin, putative, expressed K10355: actin, other eukaryote
16 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
17 Sobic.009G015100 ACT domain containing protein, expressed -
18 Sobic.004G028500 pyridoxal biosynthesis protein PDX2, putative, expressed K08681: pdxT, 5'-phosphate synthase pdxT subunit
19 Sobic.003G004200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed -
20 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein


Gene co-expression network
sample Sobic004G347800 Sobic004G347800 Sobic010G176200 Sobic010G176200 Sobic004G347800--Sobic010G176200 Sobic003G229300 Sobic003G229300 Sobic004G347800--Sobic003G229300 Sobic001G305600 Sobic001G305600 Sobic004G347800--Sobic001G305600 Sobic008G130000 Sobic008G130000 Sobic004G347800--Sobic008G130000 Sobic004G356400 Sobic004G356400 Sobic004G347800--Sobic004G356400 Sobic005G045000 Sobic005G045000 Sobic004G347800--Sobic005G045000 Sobic003G313300 Sobic003G313300 Sobic004G347800--Sobic003G313300 Sobic003G021100 Sobic003G021100 Sobic004G347800--Sobic003G021100 Sobic006G093800 Sobic006G093800 Sobic004G347800--Sobic006G093800 Sobic010G176200--Sobic008G130000 Sobic010G176200--Sobic003G313300 Sobic010G176200--Sobic004G347800 Sobic010G176200--Sobic004G356400 Sobic010G176200--Sobic003G229300 Sobic003G160200 Sobic003G160200 Sobic010G176200--Sobic003G160200 Sobic001G017300 Sobic001G017300 Sobic010G176200--Sobic001G017300 Sobic007G123500 Sobic007G123500 Sobic010G176200--Sobic007G123500 Sobic001G333800 Sobic001G333800 Sobic010G176200--Sobic001G333800 Sobic003G191700 Sobic003G191700 Sobic003G229300--Sobic003G191700 Sobic003G229300--Sobic010G176200 Sobic006G133900 Sobic006G133900 Sobic003G229300--Sobic006G133900 Sobic004G042200 Sobic004G042200 Sobic003G229300--Sobic004G042200 Sobic001G169900 Sobic001G169900 Sobic003G229300--Sobic001G169900 Sobic008G115900 Sobic008G115900 Sobic003G229300--Sobic008G115900 Sobic007G198300 Sobic007G198300 Sobic003G229300--Sobic007G198300 Sobic003G262200 Sobic003G262200 Sobic003G229300--Sobic003G262200 Sobic003G222900 Sobic003G222900 Sobic003G229300--Sobic003G222900 Sobic001G305600--Sobic004G347800 Sobic001G305600--Sobic005G045000 Sobic006G064100 Sobic006G064100 Sobic001G305600--Sobic006G064100 Sobic002G273300 Sobic002G273300 Sobic001G305600--Sobic002G273300 Sobic001G484400 Sobic001G484400 Sobic001G305600--Sobic001G484400 Sobic008G168300 Sobic008G168300 Sobic001G305600--Sobic008G168300 Sobic001G531500 Sobic001G531500 Sobic001G305600--Sobic001G531500 Sobic003G418100 Sobic003G418100 Sobic001G305600--Sobic003G418100 Sobic001G305600--Sobic010G176200 Sobic008G130000--Sobic010G176200 Sobic008G130000--Sobic004G356400 Sobic008G130000--Sobic003G160200 Sobic008G130000--Sobic003G021100 Sobic010G275700 Sobic010G275700 Sobic008G130000--Sobic010G275700 Sobic001G303200 Sobic001G303200 Sobic008G130000--Sobic001G303200 Sobic001G168250 Sobic001G168250 Sobic008G130000--Sobic001G168250 Sobic008G130000--Sobic003G229300 Sobic008G130000--Sobic001G333800 Sobic004G356400--Sobic001G017300 Sobic005G101200 Sobic005G101200 Sobic004G356400--Sobic005G101200 Sobic006G158100 Sobic006G158100 Sobic004G356400--Sobic006G158100 Sobic003G185900 Sobic003G185900 Sobic004G356400--Sobic003G185900 Sobic007G105500 Sobic007G105500 Sobic004G356400--Sobic007G105500 Sobic004G356400--Sobic001G303200 Sobic009G237100 Sobic009G237100 Sobic004G356400--Sobic009G237100 Sobic004G189800 Sobic004G189800 Sobic004G356400--Sobic004G189800 Sobic001G258200 Sobic001G258200 Sobic004G356400--Sobic001G258200 Sobic005G045000--Sobic003G313300 Sobic005G045000--Sobic001G305600 Sobic001G468700 Sobic001G468700 Sobic005G045000--Sobic001G468700 Sobic003G017100 Sobic003G017100 Sobic005G045000--Sobic003G017100 Sobic004G028500 Sobic004G028500 Sobic005G045000--Sobic004G028500 Sobic005G045000--Sobic003G191700 Sobic005G045000--Sobic004G347800 Sobic008G151100 Sobic008G151100 Sobic005G045000--Sobic008G151100 Sobic005G045000--Sobic008G168300 Sobic003G313300--Sobic003G017100 Sobic003G313300--Sobic003G191700 Sobic003G313300--Sobic010G176200 Sobic007G047400 Sobic007G047400 Sobic003G313300--Sobic007G047400 Sobic003G313300--Sobic004G028500 Sobic003G313300--Sobic001G017300 Sobic003G313300--Sobic001G468700 Sobic010G002700 Sobic010G002700 Sobic003G313300--Sobic010G002700 Sobic005G206300 Sobic005G206300 Sobic003G313300--Sobic005G206300 Sobic003G021100--Sobic010G275700 Sobic003G021100--Sobic005G101200 Sobic004G281800 Sobic004G281800 Sobic003G021100--Sobic004G281800 Sobic003G021100--Sobic004G189800 Sobic009G038900 Sobic009G038900 Sobic003G021100--Sobic009G038900 Sobic010G251700 Sobic010G251700 Sobic003G021100--Sobic010G251700 Sobic010G085100 Sobic010G085100 Sobic003G021100--Sobic010G085100 Sobic004G027600 Sobic004G027600 Sobic003G021100--Sobic004G027600 Sobic003G021100--Sobic008G130000 Sobic006G093800--Sobic001G017300 Sobic010G249700 Sobic010G249700 Sobic006G093800--Sobic010G249700 Sobic006G093800--Sobic004G356400 Sobic001G134100 Sobic001G134100 Sobic006G093800--Sobic001G134100 Sobic006G093800--Sobic005G101200 Sobic006G093800--Sobic010G085100 Sobic006G093800--Sobic004G189800 Sobic006G093800--Sobic004G027600 Sobic007G136200 Sobic007G136200 Sobic006G093800--Sobic007G136200
Octagon: transcription factors


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