Gene annotation
Transcriptome id Sobic.007G047400.1
Synonym LATE ELONGATED HYPOCOTYL, SbLHY, LHY1, Sb07g003870, LHY;LATE ELONGATED HYPOCOTYL , LHY
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
- (PubMedID : 21930910)
- (PubMedID : 24884377)
MYB family transcription factor, putative, expressed
UniProt C5YHA4 , I3RGW3
Pfam PF00249
Panther DB PTHR12802 PTHR12802:SF43
NCBI CDD -
KEGG Orthology K12133; MYB-related transcription factor LHY
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G01060 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os08g06110.5 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a030081 , Zm00025a055134
Brachypodium PNT66739 , KQJ95322
Barley HORVU7Hr1G070870.22 , HORVU7Hr1G070870.23 , HORVU7Hr1G070870.20 , HORVU7Hr1G070870.21 , HORVU7Hr1G070870.26 , HORVU7Hr1G070870.27 , HORVU7Hr1G070870.24 , HORVU7Hr1G070870.25 , HORVU7Hr1G070870.28 , HORVU7Hr1G070870.29 , HORVU7Hr1G070870.19 , HORVU7Hr1G070870.18 , HORVU7Hr1G070870.13 , HORVU7Hr1G070870.12 , HORVU7Hr1G070870.11 , HORVU7Hr1G070870.10 , HORVU7Hr1G070870.17 , HORVU7Hr1G070870.16 , HORVU7Hr1G070870.15 , HORVU7Hr1G070870.14 , HORVU7Hr1G070870.8 , HORVU7Hr1G070870.3 , HORVU7Hr1G070870.2 , HORVU7Hr1G070870.1 , HORVU7Hr1G070870.7 , HORVU7Hr1G070870.6 , HORVU7Hr1G070870.5 , HORVU7Hr1G070870.4 , HORVU7Hr1G070870.9 , HORVU7Hr1G070870.39 , HORVU7Hr1G070870.38 , HORVU7Hr1G070870.35 , HORVU7Hr1G070870.34 , HORVU7Hr1G070870.37 , HORVU7Hr1G070870.36 , HORVU7Hr1G070870.31 , HORVU7Hr1G070870.30 , HORVU7Hr1G070870.33 , HORVU7Hr1G070870.32
Wheat TraesCS7B02G188000 , TraesCS7D02G295400 , TraesCS7D02G295400 , TraesCS7D02G295400 , TraesCS7B02G188000 , TraesCS7B02G188000 , TraesCS7B02G188000 , TraesCS7D02G295400 , TraesCS7A02G299400 , TraesCS7A02G299400 , TraesCS7A02G299400
Populus -


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cDNA sequences
Sobic.007G047400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
2 Sobic.002G273300 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
3 Sobic.003G021100 expressed protein -
4 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
5 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
6 Sobic.005G206300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATA15 protein, putative, expressed -
7 Sobic.010G275700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
8 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
10 Sobic.004G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
11 Sobic.005G045000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
12 Sobic.009G015100 ACT domain containing protein, expressed -
13 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
14 Sobic.003G004200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed -
15 Sobic.004G343500 OsCttP2 - Putative C-terminal processing peptidase homologue, expressed -
16 Sobic.001G305600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
17 Sobic.003G391200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
18 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
20 Sobic.010G249700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic007G047400 Sobic007G047400 Sobic003G313300 Sobic003G313300 Sobic007G047400--Sobic003G313300 Sobic002G273300 Sobic002G273300 Sobic007G047400--Sobic002G273300 Sobic003G021100 Sobic003G021100 Sobic007G047400--Sobic003G021100 Sobic004G281800 Sobic004G281800 Sobic007G047400--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic007G047400--Sobic005G101200 Sobic005G206300 Sobic005G206300 Sobic007G047400--Sobic005G206300 Sobic010G275700 Sobic010G275700 Sobic007G047400--Sobic010G275700 Sobic010G176200 Sobic010G176200 Sobic007G047400--Sobic010G176200 Sobic001G017300 Sobic001G017300 Sobic007G047400--Sobic001G017300 Sobic003G017100 Sobic003G017100 Sobic003G313300--Sobic003G017100 Sobic003G191700 Sobic003G191700 Sobic003G313300--Sobic003G191700 Sobic003G313300--Sobic010G176200 Sobic003G313300--Sobic007G047400 Sobic004G028500 Sobic004G028500 Sobic003G313300--Sobic004G028500 Sobic003G313300--Sobic001G017300 Sobic001G468700 Sobic001G468700 Sobic003G313300--Sobic001G468700 Sobic010G002700 Sobic010G002700 Sobic003G313300--Sobic010G002700 Sobic003G313300--Sobic005G206300 Sobic004G343500 Sobic004G343500 Sobic002G273300--Sobic004G343500 Sobic002G273300--Sobic007G047400 Sobic009G249600 Sobic009G249600 Sobic002G273300--Sobic009G249600 Sobic001G239500 Sobic001G239500 Sobic002G273300--Sobic001G239500 Sobic001G305600 Sobic001G305600 Sobic002G273300--Sobic001G305600 Sobic003G004200 Sobic003G004200 Sobic002G273300--Sobic003G004200 Sobic004G351700 Sobic004G351700 Sobic002G273300--Sobic004G351700 Sobic009G054900 Sobic009G054900 Sobic002G273300--Sobic009G054900 Sobic003G009700 Sobic003G009700 Sobic002G273300--Sobic003G009700 Sobic003G021100--Sobic010G275700 Sobic003G021100--Sobic005G101200 Sobic003G021100--Sobic004G281800 Sobic004G189800 Sobic004G189800 Sobic003G021100--Sobic004G189800 Sobic009G038900 Sobic009G038900 Sobic003G021100--Sobic009G038900 Sobic010G251700 Sobic010G251700 Sobic003G021100--Sobic010G251700 Sobic010G085100 Sobic010G085100 Sobic003G021100--Sobic010G085100 Sobic004G027600 Sobic004G027600 Sobic003G021100--Sobic004G027600 Sobic008G130000 Sobic008G130000 Sobic003G021100--Sobic008G130000 Sobic004G281800--Sobic009G038900 Sobic004G281800--Sobic005G101200 Sobic001G352400 Sobic001G352400 Sobic004G281800--Sobic001G352400 Sobic004G281800--Sobic010G275700 Sobic004G281800--Sobic003G021100 Sobic002G382700 Sobic002G382700 Sobic004G281800--Sobic002G382700 Sobic005G106600 Sobic005G106600 Sobic004G281800--Sobic005G106600 Sobic004G312600 Sobic004G312600 Sobic004G281800--Sobic004G312600 Sobic003G220100 Sobic003G220100 Sobic004G281800--Sobic003G220100 Sobic005G101200--Sobic004G189800 Sobic005G068700 Sobic005G068700 Sobic005G101200--Sobic005G068700 Sobic002G404800 Sobic002G404800 Sobic005G101200--Sobic002G404800 Sobic001G258200 Sobic001G258200 Sobic005G101200--Sobic001G258200 Sobic005G101200--Sobic009G038900 Sobic007G105500 Sobic007G105500 Sobic005G101200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic005G101200--Sobic003G185900 Sobic005G101200--Sobic010G085100 Sobic005G101200--Sobic004G281800 Sobic005G231500 Sobic005G231500 Sobic005G206300--Sobic005G231500 Sobic004G356400 Sobic004G356400 Sobic005G206300--Sobic004G356400 Sobic005G206300--Sobic001G017300 Sobic003G391200 Sobic003G391200 Sobic005G206300--Sobic003G391200 Sobic005G206300--Sobic005G101200 Sobic009G015100 Sobic009G015100 Sobic005G206300--Sobic009G015100 Sobic004G154200 Sobic004G154200 Sobic005G206300--Sobic004G154200 Sobic010G249700 Sobic010G249700 Sobic005G206300--Sobic010G249700 Sobic005G206300--Sobic003G313300 Sobic010G275700--Sobic003G021100 Sobic010G275700--Sobic005G101200 Sobic010G275700--Sobic004G281800 Sobic010G275700--Sobic001G352400 Sobic010G275700--Sobic004G189800 Sobic010G275700--Sobic002G382700 Sobic001G333800 Sobic001G333800 Sobic010G275700--Sobic001G333800 Sobic002G119100 Sobic002G119100 Sobic010G275700--Sobic002G119100 Sobic010G275700--Sobic009G038900 Sobic010G176200--Sobic008G130000 Sobic010G176200--Sobic003G313300 Sobic004G347800 Sobic004G347800 Sobic010G176200--Sobic004G347800 Sobic010G176200--Sobic004G356400 Sobic003G229300 Sobic003G229300 Sobic010G176200--Sobic003G229300 Sobic003G160200 Sobic003G160200 Sobic010G176200--Sobic003G160200 Sobic010G176200--Sobic001G017300 Sobic007G123500 Sobic007G123500 Sobic010G176200--Sobic007G123500 Sobic010G176200--Sobic001G333800 Sobic006G158100 Sobic006G158100 Sobic001G017300--Sobic006G158100 Sobic001G017300--Sobic004G356400 Sobic006G093800 Sobic006G093800 Sobic001G017300--Sobic006G093800 Sobic001G017300--Sobic010G249700 Sobic007G136200 Sobic007G136200 Sobic001G017300--Sobic007G136200 Sobic003G276300 Sobic003G276300 Sobic001G017300--Sobic003G276300 Sobic001G017300--Sobic005G101200 Sobic001G169900 Sobic001G169900 Sobic001G017300--Sobic001G169900 Sobic001G017300--Sobic010G002700
Octagon: transcription factors


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