Gene annotation
Transcriptome id Sobic.003G191700.2,Sobic.003G191700.1,Sobic.003G191700.3
Synonym ELF3, PYK20, Sb03g025560
Functional annotation ELF3 protein, putative, expressed
UniProt A0A1W0VY28 , A0A1W0VY32 , C5XNP1
Pfam -
Panther DB PTHR34281 PTHR34281:SF1
NCBI CDD -
KEGG Orthology K12125; protein EARLY FLOWERING 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G25930 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os01g38530.1,LOC_Os06g05060.1 : ELF3 protein, putative, expressed
MaizeGDB (Corn) Zm00025a044738 , Zm00025a048252 , Zm00025a028422
Brachypodium KQK04562
Barley -
Wheat TraesCS1A02G443200 , TraesCS1A02G443200 , TraesCS1B02G477400 , TraesCS1D02G451200 , TraesCS1D02G451200
Populus -


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cDNA sequences
Sobic.003G191700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
2 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
3 Sobic.006G133900 NIN, putative, expressed -
4 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
5 Sobic.003G017100 ABC transporter, ATP-binding protein, putative, expressed -
6 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
7 Sobic.007G198300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
8 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
9 Sobic.010G002700 expressed protein -
10 Sobic.007G106800 nucleolar protein NOP5, putative, expressed -
11 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
12 Sobic.009G238000 suppressor of phythchrome A, putative, expressed K16240: protein suppressor of PHYA-105 1
13 Sobic.001G212300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myosin-2 heavy chain, non muscle, putative, expressed -
14 Sobic.008G151100 protein kinase domain containing protein, expressed -
15 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
16 Sobic.003G220100 - -
17 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
18 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
19 Sobic.003G370700 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS1-18 - C2H2 zinc finger protein, expressed -
20 Sobic.003G198800 myosin, putative, expressed K10357: myosin V


Gene co-expression network
sample Sobic003G191700 Sobic003G191700 Sobic004G042200 Sobic004G042200 Sobic003G191700--Sobic004G042200 Sobic003G313300 Sobic003G313300 Sobic003G191700--Sobic003G313300 Sobic006G133900 Sobic006G133900 Sobic003G191700--Sobic006G133900 Sobic003G229300 Sobic003G229300 Sobic003G191700--Sobic003G229300 Sobic003G017100 Sobic003G017100 Sobic003G191700--Sobic003G017100 Sobic009G038900 Sobic009G038900 Sobic003G191700--Sobic009G038900 Sobic007G198300 Sobic007G198300 Sobic003G191700--Sobic007G198300 Sobic003G155100 Sobic003G155100 Sobic003G191700--Sobic003G155100 Sobic010G002700 Sobic010G002700 Sobic003G191700--Sobic010G002700 Sobic004G042200--Sobic009G038900 Sobic004G042200--Sobic010G002700 Sobic004G042200--Sobic003G191700 Sobic006G050700 Sobic006G050700 Sobic004G042200--Sobic006G050700 Sobic003G220100 Sobic003G220100 Sobic004G042200--Sobic003G220100 Sobic004G042200--Sobic003G155100 Sobic010G243900 Sobic010G243900 Sobic004G042200--Sobic010G243900 Sobic005G106600 Sobic005G106600 Sobic004G042200--Sobic005G106600 Sobic004G042200--Sobic006G133900 Sobic003G313300--Sobic003G017100 Sobic003G313300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G313300--Sobic010G176200 Sobic007G047400 Sobic007G047400 Sobic003G313300--Sobic007G047400 Sobic004G028500 Sobic004G028500 Sobic003G313300--Sobic004G028500 Sobic001G017300 Sobic001G017300 Sobic003G313300--Sobic001G017300 Sobic001G468700 Sobic001G468700 Sobic003G313300--Sobic001G468700 Sobic003G313300--Sobic010G002700 Sobic005G206300 Sobic005G206300 Sobic003G313300--Sobic005G206300 Sobic004G181600 Sobic004G181600 Sobic006G133900--Sobic004G181600 Sobic001G454500 Sobic001G454500 Sobic006G133900--Sobic001G454500 Sobic006G133900--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic008G130100 Sobic008G130100 Sobic006G133900--Sobic008G130100 Sobic006G065600 Sobic006G065600 Sobic006G133900--Sobic006G065600 Sobic006G133900--Sobic003G191700 Sobic003G229300--Sobic003G191700 Sobic003G229300--Sobic010G176200 Sobic003G229300--Sobic006G133900 Sobic003G229300--Sobic004G042200 Sobic001G169900 Sobic001G169900 Sobic003G229300--Sobic001G169900 Sobic008G115900 Sobic008G115900 Sobic003G229300--Sobic008G115900 Sobic003G229300--Sobic007G198300 Sobic003G262200 Sobic003G262200 Sobic003G229300--Sobic003G262200 Sobic003G222900 Sobic003G222900 Sobic003G229300--Sobic003G222900 Sobic002G006600 Sobic002G006600 Sobic003G017100--Sobic002G006600 Sobic003G017100--Sobic010G002700 Sobic001G198100 Sobic001G198100 Sobic003G017100--Sobic001G198100 Sobic003G276300 Sobic003G276300 Sobic003G017100--Sobic003G276300 Sobic003G017100--Sobic001G169900 Sobic003G017100--Sobic003G313300 Sobic003G017100--Sobic001G468700 Sobic003G247400 Sobic003G247400 Sobic003G017100--Sobic003G247400 Sobic003G017100--Sobic003G191700 Sobic004G281800 Sobic004G281800 Sobic009G038900--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic009G038900--Sobic005G101200 Sobic009G038900--Sobic005G106600 Sobic005G068700 Sobic005G068700 Sobic009G038900--Sobic005G068700 Sobic009G038900--Sobic004G042200 Sobic009G038900--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic010G085100 Sobic010G085100 Sobic009G038900--Sobic010G085100 Sobic001G375100 Sobic001G375100 Sobic007G198300--Sobic001G375100 Sobic007G198300--Sobic003G155100 Sobic007G198300--Sobic008G130100 Sobic007G198300--Sobic003G191700 Sobic007G198300--Sobic009G038900 Sobic007G198300--Sobic003G229300 Sobic007G198300--Sobic006G219600 Sobic007G198300--Sobic006G133900 Sobic001G381600 Sobic001G381600 Sobic007G198300--Sobic001G381600 Sobic008G001200 Sobic008G001200 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic010G206900 Sobic010G206900 Sobic003G155100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic003G155100--Sobic001G230000 Sobic003G155100--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic003G155100--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic010G002700--Sobic003G017100 Sobic010G002700--Sobic001G169900 Sobic005G118400 Sobic005G118400 Sobic010G002700--Sobic005G118400 Sobic010G043800 Sobic010G043800 Sobic010G002700--Sobic010G043800 Sobic001G378100 Sobic001G378100 Sobic010G002700--Sobic001G378100 Sobic007G136200 Sobic007G136200 Sobic010G002700--Sobic007G136200 Sobic010G002700--Sobic003G276300 Sobic010G002700--Sobic001G198100 Sobic001G530900 Sobic001G530900 Sobic010G002700--Sobic001G530900
Octagon: transcription factors


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