Gene annotation
Transcriptome id Sobic.004G042200.2,Sobic.004G042200.1
Synonym ZTL, Sb04g003660, ADO1, LKP1, FKL2
Functional annotation OsFBO8 - F-box and other domain containing protein, expressed
UniProt C5XUQ2
Pfam PF12937 PF13426 PF13415 PF13418
Panther DB PTHR23244 PTHR23244:SF302
NCBI CDD KOG4693; Uncharacterized conserved protein, contains kelch repeat
KEGG Orthology K12115; clock-associated PAS protein ZTL
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G57360 : Galactose oxidase/kelch repeat superfamily protein
RAP-DB (Rice) LOC_Os02g05700.1 : OsFBO8 - F-box and other domain containing protein, expressed
MaizeGDB (Corn) Zm00025a041819 , Zm00025a034882 , Zm00025a018271 , Zm00025a019004
Brachypodium KQK17308 , KQJ93356 , KQJ93357 , KQJ93355
Barley HORVU7Hr1G099010.2 , HORVU6Hr1G022330.4 , HORVU6Hr1G022330.2 , HORVU6Hr1G022330.3 , HORVU7Hr1G099010.1 , HORVU7Hr1G099010.3 , HORVU7Hr1G099010.4 , HORVU6Hr1G022330.5 , HORVU6Hr1G022330.1
Wheat TraesCS6A02G121500 , TraesCS7A02G431600 , TraesCS6B02G149800 , TraesCS6D02G111600 , TraesCS7D02G423400 , TraesCS6B02G426300
Populus PNS93497


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cDNA sequences
Sobic.004G042200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
2 Sobic.010G002700 expressed protein -
3 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
4 Sobic.006G050700 disease resistance RPP13-like protein 1, putative, expressed -
5 Sobic.003G220100 - -
6 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
7 Sobic.010G243900 OsFBO9 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
8 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
9 Sobic.006G133900 NIN, putative, expressed -
10 Sobic.003G017100 ABC transporter, ATP-binding protein, putative, expressed -
11 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
12 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
13 Sobic.001G133000 expressed protein -
14 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
15 Sobic.001G530900 expressed protein -
16 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
17 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
18 Sobic.001G374100 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
19 Sobic.003G217700 - -
20 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3


Gene co-expression network
sample Sobic004G042200 Sobic004G042200 Sobic009G038900 Sobic009G038900 Sobic004G042200--Sobic009G038900 Sobic010G002700 Sobic010G002700 Sobic004G042200--Sobic010G002700 Sobic003G191700 Sobic003G191700 Sobic004G042200--Sobic003G191700 Sobic006G050700 Sobic006G050700 Sobic004G042200--Sobic006G050700 Sobic003G220100 Sobic003G220100 Sobic004G042200--Sobic003G220100 Sobic003G155100 Sobic003G155100 Sobic004G042200--Sobic003G155100 Sobic010G243900 Sobic010G243900 Sobic004G042200--Sobic010G243900 Sobic005G106600 Sobic005G106600 Sobic004G042200--Sobic005G106600 Sobic006G133900 Sobic006G133900 Sobic004G042200--Sobic006G133900 Sobic004G281800 Sobic004G281800 Sobic009G038900--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic009G038900--Sobic005G101200 Sobic009G038900--Sobic005G106600 Sobic005G068700 Sobic005G068700 Sobic009G038900--Sobic005G068700 Sobic009G038900--Sobic004G042200 Sobic009G038900--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic010G085100 Sobic010G085100 Sobic009G038900--Sobic010G085100 Sobic003G017100 Sobic003G017100 Sobic010G002700--Sobic003G017100 Sobic001G169900 Sobic001G169900 Sobic010G002700--Sobic001G169900 Sobic005G118400 Sobic005G118400 Sobic010G002700--Sobic005G118400 Sobic010G043800 Sobic010G043800 Sobic010G002700--Sobic010G043800 Sobic001G378100 Sobic001G378100 Sobic010G002700--Sobic001G378100 Sobic007G136200 Sobic007G136200 Sobic010G002700--Sobic007G136200 Sobic003G276300 Sobic003G276300 Sobic010G002700--Sobic003G276300 Sobic001G198100 Sobic001G198100 Sobic010G002700--Sobic001G198100 Sobic001G530900 Sobic001G530900 Sobic010G002700--Sobic001G530900 Sobic003G191700--Sobic004G042200 Sobic003G313300 Sobic003G313300 Sobic003G191700--Sobic003G313300 Sobic003G191700--Sobic006G133900 Sobic003G229300 Sobic003G229300 Sobic003G191700--Sobic003G229300 Sobic003G191700--Sobic003G017100 Sobic003G191700--Sobic009G038900 Sobic007G198300 Sobic007G198300 Sobic003G191700--Sobic007G198300 Sobic003G191700--Sobic003G155100 Sobic003G191700--Sobic010G002700 Sobic006G050700--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic006G050700--Sobic006G219600 Sobic008G001200 Sobic008G001200 Sobic006G050700--Sobic008G001200 Sobic009G201300 Sobic009G201300 Sobic006G050700--Sobic009G201300 Sobic002G346200 Sobic002G346200 Sobic006G050700--Sobic002G346200 Sobic006G050700--Sobic004G042200 Sobic010G206900 Sobic010G206900 Sobic006G050700--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic006G050700--Sobic001G230000 Sobic001G527800 Sobic001G527800 Sobic006G050700--Sobic001G527800 Sobic003G220100--Sobic005G106600 Sobic003G220100--Sobic001G333800 Sobic004G312600 Sobic004G312600 Sobic003G220100--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic003G220100--Sobic007G058100 Sobic003G220100--Sobic009G038900 Sobic003G220100--Sobic001G378100 Sobic003G220100--Sobic001G169900 Sobic003G073800 Sobic003G073800 Sobic003G220100--Sobic003G073800 Sobic003G220100--Sobic010G002700 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic003G155100--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic001G046200 Sobic001G046200 Sobic010G243900--Sobic001G046200 Sobic010G243900--Sobic004G042200 Sobic010G149200 Sobic010G149200 Sobic010G243900--Sobic010G149200 Sobic001G161800 Sobic001G161800 Sobic010G243900--Sobic001G161800 Sobic003G398700 Sobic003G398700 Sobic010G243900--Sobic003G398700 Sobic008G113100 Sobic008G113100 Sobic010G243900--Sobic008G113100 Sobic010G021500 Sobic010G021500 Sobic010G243900--Sobic010G021500 Sobic002G029900 Sobic002G029900 Sobic010G243900--Sobic002G029900 Sobic002G042800 Sobic002G042800 Sobic010G243900--Sobic002G042800 Sobic005G106600--Sobic003G220100 Sobic005G106600--Sobic001G333800 Sobic005G106600--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic005G106600--Sobic001G133000 Sobic005G106600--Sobic004G312600 Sobic005G106600--Sobic007G058100 Sobic005G106600--Sobic007G136200 Sobic005G106600--Sobic006G219600 Sobic005G106600--Sobic001G378100 Sobic004G181600 Sobic004G181600 Sobic006G133900--Sobic004G181600 Sobic001G454500 Sobic001G454500 Sobic006G133900--Sobic001G454500 Sobic006G133900--Sobic003G155100 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic008G130100 Sobic008G130100 Sobic006G133900--Sobic008G130100 Sobic006G065600 Sobic006G065600 Sobic006G133900--Sobic006G065600 Sobic006G133900--Sobic003G191700
Octagon: transcription factors


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