Gene annotation
Transcriptome id Sobic.003G313300.4,Sobic.003G313300.5,Sobic.003G313300.2,Sobic.003G313300.1,Sobic.003G313300.3
Synonym Sb03g036120, TZP
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
plus-3 domain containing protein, expressed
UniProt A0A1B6Q6E1 , A0A1B6Q6E2
Pfam PF03126
Panther DB PTHR13115 PTHR13115:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G43630 : zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os01g56780.1,LOC_Os01g56780.2 : plus-3 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a027340 , Zm00025a028844
Brachypodium KQK10008 , KQK10009 , KQK10010 , KQK10007 , KQK09957
Barley HORVU3Hr1G075830.1 , HORVU3Hr1G075820.2 , HORVU3Hr1G075820.1
Wheat TraesCS3B02G343800 , TraesCS3B02G343800 , TraesCS3B02G343800 , TraesCS3B02G343800 , TraesCS3B02G343800 , TraesCS3B02G343800 , TraesCS3B02G343800 , TraesCS3B02G343800 , TraesCS3A02G321700 , TraesCS3A02G321700 , TraesCS3A02G321700 , TraesCS3A02G321700 , TraesCS3A02G321700 , TraesCS3A02G321700 , TraesCS3A02G321700 , TraesCS3D02G309700 , TraesCS3D02G309700 , TraesCS3D02G309700 , TraesCS3D02G309700 , TraesCS3D02G309700 , TraesCS3D02G309700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G017100 ABC transporter, ATP-binding protein, putative, expressed -
2 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
3 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.007G047400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@MYB family transcription factor, putative, expressed K12133: MYB-related transcription factor LHY
5 Sobic.004G028500 pyridoxal biosynthesis protein PDX2, putative, expressed K08681: pdxT, 5'-phosphate synthase pdxT subunit
6 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
7 Sobic.001G468700 expressed protein -
8 Sobic.010G002700 expressed protein -
9 Sobic.005G206300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATA15 protein, putative, expressed -
10 Sobic.005G045000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
11 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
12 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
13 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
14 Sobic.002G006600 -(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K14272: glutamate--glyoxylate aminotransferase
15 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
16 Sobic.003G220100 - -
17 Sobic.007G198300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
18 Sobic.001G212300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myosin-2 heavy chain, non muscle, putative, expressed -
19 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
20 Sobic.003G370700 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS1-18 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic003G313300 Sobic003G313300 Sobic003G017100 Sobic003G017100 Sobic003G313300--Sobic003G017100 Sobic003G191700 Sobic003G191700 Sobic003G313300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G313300--Sobic010G176200 Sobic007G047400 Sobic007G047400 Sobic003G313300--Sobic007G047400 Sobic004G028500 Sobic004G028500 Sobic003G313300--Sobic004G028500 Sobic001G017300 Sobic001G017300 Sobic003G313300--Sobic001G017300 Sobic001G468700 Sobic001G468700 Sobic003G313300--Sobic001G468700 Sobic010G002700 Sobic010G002700 Sobic003G313300--Sobic010G002700 Sobic005G206300 Sobic005G206300 Sobic003G313300--Sobic005G206300 Sobic002G006600 Sobic002G006600 Sobic003G017100--Sobic002G006600 Sobic003G017100--Sobic010G002700 Sobic001G198100 Sobic001G198100 Sobic003G017100--Sobic001G198100 Sobic003G276300 Sobic003G276300 Sobic003G017100--Sobic003G276300 Sobic001G169900 Sobic001G169900 Sobic003G017100--Sobic001G169900 Sobic003G017100--Sobic003G313300 Sobic003G017100--Sobic001G468700 Sobic003G247400 Sobic003G247400 Sobic003G017100--Sobic003G247400 Sobic003G017100--Sobic003G191700 Sobic004G042200 Sobic004G042200 Sobic003G191700--Sobic004G042200 Sobic003G191700--Sobic003G313300 Sobic006G133900 Sobic006G133900 Sobic003G191700--Sobic006G133900 Sobic003G229300 Sobic003G229300 Sobic003G191700--Sobic003G229300 Sobic003G191700--Sobic003G017100 Sobic009G038900 Sobic009G038900 Sobic003G191700--Sobic009G038900 Sobic007G198300 Sobic007G198300 Sobic003G191700--Sobic007G198300 Sobic003G155100 Sobic003G155100 Sobic003G191700--Sobic003G155100 Sobic003G191700--Sobic010G002700 Sobic008G130000 Sobic008G130000 Sobic010G176200--Sobic008G130000 Sobic010G176200--Sobic003G313300 Sobic004G347800 Sobic004G347800 Sobic010G176200--Sobic004G347800 Sobic004G356400 Sobic004G356400 Sobic010G176200--Sobic004G356400 Sobic010G176200--Sobic003G229300 Sobic003G160200 Sobic003G160200 Sobic010G176200--Sobic003G160200 Sobic010G176200--Sobic001G017300 Sobic007G123500 Sobic007G123500 Sobic010G176200--Sobic007G123500 Sobic001G333800 Sobic001G333800 Sobic010G176200--Sobic001G333800 Sobic007G047400--Sobic003G313300 Sobic002G273300 Sobic002G273300 Sobic007G047400--Sobic002G273300 Sobic003G021100 Sobic003G021100 Sobic007G047400--Sobic003G021100 Sobic004G281800 Sobic004G281800 Sobic007G047400--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic007G047400--Sobic005G101200 Sobic007G047400--Sobic005G206300 Sobic010G275700 Sobic010G275700 Sobic007G047400--Sobic010G275700 Sobic007G047400--Sobic010G176200 Sobic007G047400--Sobic001G017300 Sobic004G028500--Sobic001G468700 Sobic004G028500--Sobic003G313300 Sobic001G100100 Sobic001G100100 Sobic004G028500--Sobic001G100100 Sobic004G028500--Sobic003G017100 Sobic004G028500--Sobic010G002700 Sobic005G045000 Sobic005G045000 Sobic004G028500--Sobic005G045000 Sobic004G028500--Sobic002G006600 Sobic003G004200 Sobic003G004200 Sobic004G028500--Sobic003G004200 Sobic004G028500--Sobic001G198100 Sobic006G158100 Sobic006G158100 Sobic001G017300--Sobic006G158100 Sobic001G017300--Sobic004G356400 Sobic006G093800 Sobic006G093800 Sobic001G017300--Sobic006G093800 Sobic010G249700 Sobic010G249700 Sobic001G017300--Sobic010G249700 Sobic007G136200 Sobic007G136200 Sobic001G017300--Sobic007G136200 Sobic001G017300--Sobic003G276300 Sobic001G017300--Sobic005G101200 Sobic001G017300--Sobic001G169900 Sobic001G017300--Sobic010G002700 Sobic001G468700--Sobic010G002700 Sobic001G468700--Sobic003G017100 Sobic001G468700--Sobic004G028500 Sobic001G468700--Sobic001G017300 Sobic009G121000 Sobic009G121000 Sobic001G468700--Sobic009G121000 Sobic001G468700--Sobic003G247400 Sobic001G468700--Sobic003G313300 Sobic001G468700--Sobic003G276300 Sobic001G468700--Sobic003G004200 Sobic010G002700--Sobic003G017100 Sobic010G002700--Sobic001G169900 Sobic005G118400 Sobic005G118400 Sobic010G002700--Sobic005G118400 Sobic010G043800 Sobic010G043800 Sobic010G002700--Sobic010G043800 Sobic001G378100 Sobic001G378100 Sobic010G002700--Sobic001G378100 Sobic010G002700--Sobic007G136200 Sobic010G002700--Sobic003G276300 Sobic010G002700--Sobic001G198100 Sobic001G530900 Sobic001G530900 Sobic010G002700--Sobic001G530900 Sobic005G231500 Sobic005G231500 Sobic005G206300--Sobic005G231500 Sobic005G206300--Sobic004G356400 Sobic005G206300--Sobic001G017300 Sobic003G391200 Sobic003G391200 Sobic005G206300--Sobic003G391200 Sobic005G206300--Sobic005G101200 Sobic009G015100 Sobic009G015100 Sobic005G206300--Sobic009G015100 Sobic004G154200 Sobic004G154200 Sobic005G206300--Sobic004G154200 Sobic005G206300--Sobic010G249700 Sobic005G206300--Sobic003G313300
Octagon: transcription factors


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