Gene annotation
Transcriptome id Sobic.004G028500.2,Sobic.004G028500.1
Synonym ATPDX2, Sb04g002510, PDX2, EMB2407
Functional annotation pyridoxal biosynthesis protein PDX2, putative, expressed
UniProt A0A194YNG8 , A0A194YMD6
Pfam PF07685
Panther DB PTHR31559 PTHR31559:SF0
NCBI CDD KOG3210; Imidazoleglycerol-phosphate synthase subunit H-like
KEGG Orthology K08681; pdxT, 5'-phosphate synthase pdxT subunit
Gene Ontology GO:0009236; cobalamin biosynthetic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G60540 : pyridoxine biosynthesis 2
RAP-DB (Rice) LOC_Os02g03740.1 : pyridoxal biosynthesis protein PDX2, putative, expressed
MaizeGDB (Corn) Zm00025a034994
Brachypodium KQK23359 , KQJ93123
Barley HORVU4Hr1G075840.2 , HORVU4Hr1G075840.3 , HORVU4Hr1G075840.1 , HORVU4Hr1G075840.6 , HORVU4Hr1G075840.7 , HORVU4Hr1G075840.4 , HORVU4Hr1G075840.5 , HORVU4Hr1G075840.8 , HORVU6Hr1G015450.1 , HORVU6Hr1G015450.2
Wheat TraesCS4D02G289800 , TraesCS4D02G289800 , TraesCS6A02G084600 , TraesCS6B02G117600 , TraesCS4B02G291200 , TraesCS4B02G291200 , TraesCSU02G113600 , TraesCS4A02G013200 , TraesCS4A02G013200
Populus -


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cDNA sequences
Sobic.004G028500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G468700 expressed protein -
2 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
3 Sobic.001G100100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@GATA transcription factor 25, putative, expressed -
4 Sobic.003G017100 ABC transporter, ATP-binding protein, putative, expressed -
5 Sobic.010G002700 expressed protein -
6 Sobic.005G045000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
7 Sobic.002G006600 -(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K14272: glutamate--glyoxylate aminotransferase
8 Sobic.003G004200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed -
9 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -
10 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
11 Sobic.005G206300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATA15 protein, putative, expressed -
12 Sobic.004G299000 expressed protein -
13 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
14 Sobic.005G118400 expressed protein -
15 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
16 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
17 Sobic.008G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
18 Sobic.003G247400 OsCttP1 - Putative C-terminal processing peptidase homologue, expressed -
19 Sobic.003G276300 zinc knuckle domain containing protein, expressed -
20 Sobic.004G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -


Gene co-expression network
sample Sobic004G028500 Sobic004G028500 Sobic001G468700 Sobic001G468700 Sobic004G028500--Sobic001G468700 Sobic003G313300 Sobic003G313300 Sobic004G028500--Sobic003G313300 Sobic001G100100 Sobic001G100100 Sobic004G028500--Sobic001G100100 Sobic003G017100 Sobic003G017100 Sobic004G028500--Sobic003G017100 Sobic010G002700 Sobic010G002700 Sobic004G028500--Sobic010G002700 Sobic005G045000 Sobic005G045000 Sobic004G028500--Sobic005G045000 Sobic002G006600 Sobic002G006600 Sobic004G028500--Sobic002G006600 Sobic003G004200 Sobic003G004200 Sobic004G028500--Sobic003G004200 Sobic001G198100 Sobic001G198100 Sobic004G028500--Sobic001G198100 Sobic001G468700--Sobic010G002700 Sobic001G468700--Sobic003G017100 Sobic001G468700--Sobic004G028500 Sobic001G017300 Sobic001G017300 Sobic001G468700--Sobic001G017300 Sobic009G121000 Sobic009G121000 Sobic001G468700--Sobic009G121000 Sobic003G247400 Sobic003G247400 Sobic001G468700--Sobic003G247400 Sobic001G468700--Sobic003G313300 Sobic003G276300 Sobic003G276300 Sobic001G468700--Sobic003G276300 Sobic001G468700--Sobic003G004200 Sobic003G313300--Sobic003G017100 Sobic003G191700 Sobic003G191700 Sobic003G313300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G313300--Sobic010G176200 Sobic007G047400 Sobic007G047400 Sobic003G313300--Sobic007G047400 Sobic003G313300--Sobic004G028500 Sobic003G313300--Sobic001G017300 Sobic003G313300--Sobic001G468700 Sobic003G313300--Sobic010G002700 Sobic005G206300 Sobic005G206300 Sobic003G313300--Sobic005G206300 Sobic001G100100--Sobic004G028500 Sobic001G169900 Sobic001G169900 Sobic001G100100--Sobic001G169900 Sobic002G104100 Sobic002G104100 Sobic001G100100--Sobic002G104100 Sobic001G100100--Sobic003G313300 Sobic004G042200 Sobic004G042200 Sobic001G100100--Sobic004G042200 Sobic003G229300 Sobic003G229300 Sobic001G100100--Sobic003G229300 Sobic003G370700 Sobic003G370700 Sobic001G100100--Sobic003G370700 Sobic001G100100--Sobic001G468700 Sobic006G133900 Sobic006G133900 Sobic001G100100--Sobic006G133900 Sobic003G017100--Sobic002G006600 Sobic003G017100--Sobic010G002700 Sobic003G017100--Sobic001G198100 Sobic003G017100--Sobic003G276300 Sobic003G017100--Sobic001G169900 Sobic003G017100--Sobic003G313300 Sobic003G017100--Sobic001G468700 Sobic003G017100--Sobic003G247400 Sobic003G017100--Sobic003G191700 Sobic010G002700--Sobic003G017100 Sobic010G002700--Sobic001G169900 Sobic005G118400 Sobic005G118400 Sobic010G002700--Sobic005G118400 Sobic010G043800 Sobic010G043800 Sobic010G002700--Sobic010G043800 Sobic001G378100 Sobic001G378100 Sobic010G002700--Sobic001G378100 Sobic007G136200 Sobic007G136200 Sobic010G002700--Sobic007G136200 Sobic010G002700--Sobic003G276300 Sobic010G002700--Sobic001G198100 Sobic001G530900 Sobic001G530900 Sobic010G002700--Sobic001G530900 Sobic005G045000--Sobic003G313300 Sobic001G305600 Sobic001G305600 Sobic005G045000--Sobic001G305600 Sobic005G045000--Sobic001G468700 Sobic005G045000--Sobic003G017100 Sobic005G045000--Sobic004G028500 Sobic005G045000--Sobic003G191700 Sobic004G347800 Sobic004G347800 Sobic005G045000--Sobic004G347800 Sobic008G151100 Sobic008G151100 Sobic005G045000--Sobic008G151100 Sobic008G168300 Sobic008G168300 Sobic005G045000--Sobic008G168300 Sobic002G006600--Sobic003G017100 Sobic002G006600--Sobic001G198100 Sobic002G006600--Sobic010G002700 Sobic002G006600--Sobic001G169900 Sobic003G429650 Sobic003G429650 Sobic002G006600--Sobic003G429650 Sobic004G164400 Sobic004G164400 Sobic002G006600--Sobic004G164400 Sobic006G182900 Sobic006G182900 Sobic002G006600--Sobic006G182900 Sobic009G209300 Sobic009G209300 Sobic002G006600--Sobic009G209300 Sobic006G105400 Sobic006G105400 Sobic002G006600--Sobic006G105400 Sobic003G004200--Sobic001G468700 Sobic003G009700 Sobic003G009700 Sobic003G004200--Sobic003G009700 Sobic003G004200--Sobic004G028500 Sobic001G065600 Sobic001G065600 Sobic003G004200--Sobic001G065600 Sobic004G356400 Sobic004G356400 Sobic003G004200--Sobic004G356400 Sobic003G004200--Sobic003G313300 Sobic003G004200--Sobic005G045000 Sobic003G004200--Sobic005G206300 Sobic003G004200--Sobic001G017300 Sobic001G198100--Sobic003G017100 Sobic001G198100--Sobic003G247400 Sobic001G198100--Sobic001G169900 Sobic001G198100--Sobic010G002700 Sobic001G198100--Sobic002G006600 Sobic001G198100--Sobic010G043800 Sobic001G198100--Sobic009G121000 Sobic001G198100--Sobic003G276300 Sobic006G142600 Sobic006G142600 Sobic001G198100--Sobic006G142600
Octagon: transcription factors


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