Gene annotation
Transcriptome id Sobic.003G276300.2,Sobic.003G276300.1
Synonym Sb03g032820
Functional annotation zinc knuckle domain containing protein, expressed
UniProt A0A1W0VZ78 , C5XIA3
Pfam -
Panther DB PTHR23002 PTHR23002:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G20220 : zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os01g51710.1 : zinc knuckle domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038967
Brachypodium KQK09460 , KQK09461 , KQK09462 , KQK09463 , PNT72706 , KQK09459
Barley -
Wheat TraesCS3D02G248300 , TraesCS3B02G277000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G002700 expressed protein -
2 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
3 Sobic.003G017100 ABC transporter, ATP-binding protein, putative, expressed -
4 Sobic.003G247400 OsCttP1 - Putative C-terminal processing peptidase homologue, expressed -
5 Sobic.006G142600 lipase class 3 family protein, putative, expressed -
6 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
7 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
8 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -
9 Sobic.007G136200 expressed protein -
10 Sobic.009G121000 expressed protein -
11 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
12 Sobic.010G249700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.006G158100 tRNA-dihydrouridine synthase, putative, expressed K05543: tRNA-dihydrouridine synthase 2
14 Sobic.003G005000 expressed protein -
15 Sobic.001G468700 expressed protein -
16 Sobic.004G035900 expressed protein -
17 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
18 Sobic.001G394800 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.004G328000 snf1-related kinase interactor 2, putative, expressed -
20 Sobic.007G103400 expressed protein -


Gene co-expression network
sample Sobic003G276300 Sobic003G276300 Sobic010G002700 Sobic010G002700 Sobic003G276300--Sobic010G002700 Sobic001G017300 Sobic001G017300 Sobic003G276300--Sobic001G017300 Sobic003G017100 Sobic003G017100 Sobic003G276300--Sobic003G017100 Sobic003G247400 Sobic003G247400 Sobic003G276300--Sobic003G247400 Sobic006G142600 Sobic006G142600 Sobic003G276300--Sobic006G142600 Sobic001G169900 Sobic001G169900 Sobic003G276300--Sobic001G169900 Sobic010G043800 Sobic010G043800 Sobic003G276300--Sobic010G043800 Sobic001G198100 Sobic001G198100 Sobic003G276300--Sobic001G198100 Sobic007G136200 Sobic007G136200 Sobic003G276300--Sobic007G136200 Sobic010G002700--Sobic003G017100 Sobic010G002700--Sobic001G169900 Sobic005G118400 Sobic005G118400 Sobic010G002700--Sobic005G118400 Sobic010G002700--Sobic010G043800 Sobic001G378100 Sobic001G378100 Sobic010G002700--Sobic001G378100 Sobic010G002700--Sobic007G136200 Sobic010G002700--Sobic003G276300 Sobic010G002700--Sobic001G198100 Sobic001G530900 Sobic001G530900 Sobic010G002700--Sobic001G530900 Sobic006G158100 Sobic006G158100 Sobic001G017300--Sobic006G158100 Sobic004G356400 Sobic004G356400 Sobic001G017300--Sobic004G356400 Sobic006G093800 Sobic006G093800 Sobic001G017300--Sobic006G093800 Sobic010G249700 Sobic010G249700 Sobic001G017300--Sobic010G249700 Sobic001G017300--Sobic007G136200 Sobic001G017300--Sobic003G276300 Sobic005G101200 Sobic005G101200 Sobic001G017300--Sobic005G101200 Sobic001G017300--Sobic001G169900 Sobic001G017300--Sobic010G002700 Sobic002G006600 Sobic002G006600 Sobic003G017100--Sobic002G006600 Sobic003G017100--Sobic010G002700 Sobic003G017100--Sobic001G198100 Sobic003G017100--Sobic003G276300 Sobic003G017100--Sobic001G169900 Sobic003G313300 Sobic003G313300 Sobic003G017100--Sobic003G313300 Sobic001G468700 Sobic001G468700 Sobic003G017100--Sobic001G468700 Sobic003G017100--Sobic003G247400 Sobic003G191700 Sobic003G191700 Sobic003G017100--Sobic003G191700 Sobic003G247400--Sobic001G198100 Sobic003G247400--Sobic003G276300 Sobic009G121000 Sobic009G121000 Sobic003G247400--Sobic009G121000 Sobic003G247400--Sobic010G043800 Sobic003G247400--Sobic010G002700 Sobic003G247400--Sobic003G017100 Sobic007G185700 Sobic007G185700 Sobic003G247400--Sobic007G185700 Sobic003G247400--Sobic007G136200 Sobic003G247400--Sobic001G468700 Sobic006G142600--Sobic010G043800 Sobic003G306200 Sobic003G306200 Sobic006G142600--Sobic003G306200 Sobic007G103400 Sobic007G103400 Sobic006G142600--Sobic007G103400 Sobic007G108900 Sobic007G108900 Sobic006G142600--Sobic007G108900 Sobic006G142600--Sobic007G136200 Sobic006G142600--Sobic001G169900 Sobic006G142600--Sobic006G158100 Sobic002G198300 Sobic002G198300 Sobic006G142600--Sobic002G198300 Sobic003G094100 Sobic003G094100 Sobic006G142600--Sobic003G094100 Sobic001G169900--Sobic010G002700 Sobic001G169900--Sobic006G158100 Sobic001G169900--Sobic010G043800 Sobic001G169900--Sobic007G136200 Sobic001G169900--Sobic001G198100 Sobic001G169900--Sobic006G142600 Sobic001G394800 Sobic001G394800 Sobic001G169900--Sobic001G394800 Sobic001G169900--Sobic001G017300 Sobic001G169900--Sobic003G017100 Sobic010G043800--Sobic009G121000 Sobic010G043800--Sobic007G136200 Sobic001G504400 Sobic001G504400 Sobic010G043800--Sobic001G504400 Sobic010G043800--Sobic006G142600 Sobic010G043800--Sobic010G002700 Sobic010G043800--Sobic006G158100 Sobic010G043800--Sobic007G103400 Sobic010G043800--Sobic001G169900 Sobic010G043800--Sobic001G378100 Sobic001G198100--Sobic003G017100 Sobic001G198100--Sobic003G247400 Sobic001G198100--Sobic001G169900 Sobic001G198100--Sobic010G002700 Sobic001G198100--Sobic002G006600 Sobic001G198100--Sobic010G043800 Sobic001G198100--Sobic009G121000 Sobic001G198100--Sobic003G276300 Sobic001G198100--Sobic006G142600 Sobic007G136200--Sobic006G158100 Sobic007G136200--Sobic010G043800 Sobic007G136200--Sobic001G504400 Sobic007G136200--Sobic010G002700 Sobic007G136200--Sobic007G103400 Sobic007G136200--Sobic001G169900 Sobic004G337400 Sobic004G337400 Sobic007G136200--Sobic004G337400 Sobic007G136200--Sobic007G108900 Sobic007G136200--Sobic001G378100
Octagon: transcription factors


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