Gene annotation
Transcriptome id Sobic.002G006600.1,Sobic.002G006600.2
Synonym Sb02g000780, GGAT1, GGT1 , AOAT1, AOAT1, GGT1
Functional annotation - (PubMedID : 26976818)
aminotransferase, classes I and II, domain containing protein, expressed
UniProt A0A1B6Q8N2 , A0A1B6Q8L5
Pfam PF00155
Panther DB PTHR11751 PTHR11751:SF373
NCBI CDD -
KEGG Orthology K14272; glutamate--glyoxylate aminotransferase
Gene Ontology GO:0009058; biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G23310 : glutamate:glyoxylate aminotransferase,alanine-2-oxoglutarate aminotransferase 2
RAP-DB (Rice) LOC_Os07g01760.1 : aminotransferase, classes I and II, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044870 , Zm00025a016257
Brachypodium PNT77206
Barley HORVU2Hr1G063740.1 , HORVU2Hr1G063740.2 , HORVU2Hr1G063740.3 , HORVU2Hr1G063740.4 , HORVU2Hr1G063740.5 , HORVU2Hr1G063740.6
Wheat TraesCS2A02G261600 , TraesCS2A02G261600 , TraesCS2A02G261600 , TraesCS2B02G280600 , TraesCS2B02G280600 , TraesCS2B02G280600 , TraesCS2D02G262400 , TraesCS2D02G262400
Populus PNT14703


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cDNA sequences
Sobic.002G006600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G017100 ABC transporter, ATP-binding protein, putative, expressed -
2 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -
3 Sobic.010G002700 expressed protein -
4 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
5 Sobic.003G429650 - -
6 Sobic.004G164400 expressed protein -
7 Sobic.006G182900 expressed protein -
8 Sobic.009G209300 starch synthase, putative, expressed -
9 Sobic.006G105400 expressed protein -
10 Sobic.002G073250 - -
11 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
12 Sobic.002G104100 FYVE zinc finger domain containing protein, expressed -
13 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
14 Sobic.001G468700 expressed protein -
15 Sobic.010G176550 - -
16 Sobic.006G048500 - -
17 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
18 Sobic.006G048600 - -
19 Sobic.001G214300 expressed protein -
20 Sobic.010G255700 plant-specific domain TIGR01589 family protein, putative, expressed -


Gene co-expression network
sample Sobic002G006600 Sobic002G006600 Sobic003G017100 Sobic003G017100 Sobic002G006600--Sobic003G017100 Sobic001G198100 Sobic001G198100 Sobic002G006600--Sobic001G198100 Sobic010G002700 Sobic010G002700 Sobic002G006600--Sobic010G002700 Sobic001G169900 Sobic001G169900 Sobic002G006600--Sobic001G169900 Sobic003G429650 Sobic003G429650 Sobic002G006600--Sobic003G429650 Sobic004G164400 Sobic004G164400 Sobic002G006600--Sobic004G164400 Sobic006G182900 Sobic006G182900 Sobic002G006600--Sobic006G182900 Sobic009G209300 Sobic009G209300 Sobic002G006600--Sobic009G209300 Sobic006G105400 Sobic006G105400 Sobic002G006600--Sobic006G105400 Sobic003G017100--Sobic002G006600 Sobic003G017100--Sobic010G002700 Sobic003G017100--Sobic001G198100 Sobic003G276300 Sobic003G276300 Sobic003G017100--Sobic003G276300 Sobic003G017100--Sobic001G169900 Sobic003G313300 Sobic003G313300 Sobic003G017100--Sobic003G313300 Sobic001G468700 Sobic001G468700 Sobic003G017100--Sobic001G468700 Sobic003G247400 Sobic003G247400 Sobic003G017100--Sobic003G247400 Sobic003G191700 Sobic003G191700 Sobic003G017100--Sobic003G191700 Sobic001G198100--Sobic003G017100 Sobic001G198100--Sobic003G247400 Sobic001G198100--Sobic001G169900 Sobic001G198100--Sobic010G002700 Sobic001G198100--Sobic002G006600 Sobic010G043800 Sobic010G043800 Sobic001G198100--Sobic010G043800 Sobic009G121000 Sobic009G121000 Sobic001G198100--Sobic009G121000 Sobic001G198100--Sobic003G276300 Sobic006G142600 Sobic006G142600 Sobic001G198100--Sobic006G142600 Sobic010G002700--Sobic003G017100 Sobic010G002700--Sobic001G169900 Sobic005G118400 Sobic005G118400 Sobic010G002700--Sobic005G118400 Sobic010G002700--Sobic010G043800 Sobic001G378100 Sobic001G378100 Sobic010G002700--Sobic001G378100 Sobic007G136200 Sobic007G136200 Sobic010G002700--Sobic007G136200 Sobic010G002700--Sobic003G276300 Sobic010G002700--Sobic001G198100 Sobic001G530900 Sobic001G530900 Sobic010G002700--Sobic001G530900 Sobic001G169900--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic001G169900--Sobic006G158100 Sobic001G169900--Sobic010G043800 Sobic001G169900--Sobic007G136200 Sobic001G169900--Sobic001G198100 Sobic001G169900--Sobic006G142600 Sobic001G394800 Sobic001G394800 Sobic001G169900--Sobic001G394800 Sobic001G017300 Sobic001G017300 Sobic001G169900--Sobic001G017300 Sobic001G169900--Sobic003G017100 Sobic006G048500 Sobic006G048500 Sobic003G429650--Sobic006G048500 Sobic003G429650--Sobic006G182900 Sobic003G148000 Sobic003G148000 Sobic003G429650--Sobic003G148000 Sobic005G144400 Sobic005G144400 Sobic003G429650--Sobic005G144400 Sobic003G179201 Sobic003G179201 Sobic003G429650--Sobic003G179201 Sobic001G287201 Sobic001G287201 Sobic003G429650--Sobic001G287201 Sobic002G243900 Sobic002G243900 Sobic003G429650--Sobic002G243900 Sobic001G214300 Sobic001G214300 Sobic003G429650--Sobic001G214300 Sobic002G006900 Sobic002G006900 Sobic003G429650--Sobic002G006900 Sobic006G228500 Sobic006G228500 Sobic004G164400--Sobic006G228500 Sobic007G108500 Sobic007G108500 Sobic004G164400--Sobic007G108500 Sobic004G174400 Sobic004G174400 Sobic004G164400--Sobic004G174400 Sobic004G164400--Sobic002G006600 Sobic002G104100 Sobic002G104100 Sobic004G164400--Sobic002G104100 Sobic004G164400--Sobic006G105400 Sobic001G318432 Sobic001G318432 Sobic004G164400--Sobic001G318432 Sobic006G274600 Sobic006G274600 Sobic004G164400--Sobic006G274600 Sobic001G126100 Sobic001G126100 Sobic004G164400--Sobic001G126100 Sobic006G182900--Sobic003G429650 Sobic006G182900--Sobic006G048500 Sobic007G161000 Sobic007G161000 Sobic006G182900--Sobic007G161000 Sobic001G365900 Sobic001G365900 Sobic006G182900--Sobic001G365900 Sobic007G116200 Sobic007G116200 Sobic006G182900--Sobic007G116200 Sobic004G096600 Sobic004G096600 Sobic006G182900--Sobic004G096600 Sobic002G134200 Sobic002G134200 Sobic006G182900--Sobic002G134200 Sobic006G182900--Sobic001G214300 Sobic006G182900--Sobic009G209300 Sobic003G332800 Sobic003G332800 Sobic009G209300--Sobic003G332800 Sobic006G216800 Sobic006G216800 Sobic009G209300--Sobic006G216800 Sobic009G209300--Sobic003G429650 Sobic009G209300--Sobic006G182900 Sobic009G209300--Sobic006G048500 Sobic009G209300--Sobic007G116200 Sobic009G209300--Sobic002G006600 Sobic009G209300--Sobic003G148000 Sobic001G036050 Sobic001G036050 Sobic009G209300--Sobic001G036050 Sobic006G105400--Sobic001G214300 Sobic006G048600 Sobic006G048600 Sobic006G105400--Sobic006G048600 Sobic006G105400--Sobic006G048500 Sobic006G105400--Sobic006G182900 Sobic004G007100 Sobic004G007100 Sobic006G105400--Sobic004G007100 Sobic006G105400--Sobic007G161000 Sobic006G105400--Sobic001G365900 Sobic010G255700 Sobic010G255700 Sobic006G105400--Sobic010G255700 Sobic004G341900 Sobic004G341900 Sobic006G105400--Sobic004G341900
Octagon: transcription factors


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