Gene annotation
Transcriptome id Sobic.010G275700.1
Synonym CIR1, Sb10g030960, RVE2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
MYB family transcription factor, putative, expressed
UniProt A0A194YLX8
Pfam PF00249
Panther DB PTHR12802 PTHR12802:SF60
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G37260 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os06g51260.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a018552
Brachypodium KQK16640 , KQK16639
Barley HORVU7Hr1G121210.13 , HORVU7Hr1G121210.15 , HORVU7Hr1G121210.16 , HORVU7Hr1G121210.17 , HORVU7Hr1G121210.2 , HORVU7Hr1G121210.7 , HORVU7Hr1G121210.4 , HORVU7Hr1G121210.8
Wheat TraesCS7D02G540700 , TraesCS7D02G540700 , TraesCS7B02G478200 , TraesCS7B02G478200 , TraesCS7A02G553800 , TraesCS7A02G553800 , TraesCS7A02G553800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G021100 expressed protein -
2 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
3 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
4 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
6 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
7 Sobic.001G333800 MYB family transcription factor, putative, expressed -
8 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
9 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
10 Sobic.001G359300 cytochrome P450, putative, expressed -
11 Sobic.003G166200 expressed protein -
12 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
13 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -
14 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
15 Sobic.006G214300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Putative leucine-rich repeatcontaining protein DDB_G0290503(PubMedID : 31721651)@- -
16 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -
17 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G207800 integral membrane protein, putative, expressed -
20 Sobic.008G130000 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G275700 Sobic010G275700 Sobic003G021100 Sobic003G021100 Sobic010G275700--Sobic003G021100 Sobic005G101200 Sobic005G101200 Sobic010G275700--Sobic005G101200 Sobic004G281800 Sobic004G281800 Sobic010G275700--Sobic004G281800 Sobic001G352400 Sobic001G352400 Sobic010G275700--Sobic001G352400 Sobic004G189800 Sobic004G189800 Sobic010G275700--Sobic004G189800 Sobic002G382700 Sobic002G382700 Sobic010G275700--Sobic002G382700 Sobic001G333800 Sobic001G333800 Sobic010G275700--Sobic001G333800 Sobic002G119100 Sobic002G119100 Sobic010G275700--Sobic002G119100 Sobic009G038900 Sobic009G038900 Sobic010G275700--Sobic009G038900 Sobic003G021100--Sobic010G275700 Sobic003G021100--Sobic005G101200 Sobic003G021100--Sobic004G281800 Sobic003G021100--Sobic004G189800 Sobic003G021100--Sobic009G038900 Sobic010G251700 Sobic010G251700 Sobic003G021100--Sobic010G251700 Sobic010G085100 Sobic010G085100 Sobic003G021100--Sobic010G085100 Sobic004G027600 Sobic004G027600 Sobic003G021100--Sobic004G027600 Sobic008G130000 Sobic008G130000 Sobic003G021100--Sobic008G130000 Sobic005G101200--Sobic004G189800 Sobic005G068700 Sobic005G068700 Sobic005G101200--Sobic005G068700 Sobic002G404800 Sobic002G404800 Sobic005G101200--Sobic002G404800 Sobic001G258200 Sobic001G258200 Sobic005G101200--Sobic001G258200 Sobic005G101200--Sobic009G038900 Sobic007G105500 Sobic007G105500 Sobic005G101200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic005G101200--Sobic003G185900 Sobic005G101200--Sobic010G085100 Sobic005G101200--Sobic004G281800 Sobic004G281800--Sobic009G038900 Sobic004G281800--Sobic005G101200 Sobic004G281800--Sobic001G352400 Sobic004G281800--Sobic010G275700 Sobic004G281800--Sobic003G021100 Sobic004G281800--Sobic002G382700 Sobic005G106600 Sobic005G106600 Sobic004G281800--Sobic005G106600 Sobic004G312600 Sobic004G312600 Sobic004G281800--Sobic004G312600 Sobic003G220100 Sobic003G220100 Sobic004G281800--Sobic003G220100 Sobic001G352400--Sobic004G281800 Sobic001G352400--Sobic010G275700 Sobic001G352400--Sobic002G382700 Sobic004G322700 Sobic004G322700 Sobic001G352400--Sobic004G322700 Sobic001G352400--Sobic002G119100 Sobic008G038500 Sobic008G038500 Sobic001G352400--Sobic008G038500 Sobic001G352400--Sobic005G101200 Sobic004G169000 Sobic004G169000 Sobic001G352400--Sobic004G169000 Sobic001G352400--Sobic009G038900 Sobic004G189800--Sobic005G101200 Sobic004G189800--Sobic001G258200 Sobic004G189800--Sobic004G027600 Sobic009G256100 Sobic009G256100 Sobic004G189800--Sobic009G256100 Sobic004G189800--Sobic003G185900 Sobic004G189800--Sobic005G068700 Sobic004G189800--Sobic002G404800 Sobic004G189800--Sobic002G382700 Sobic008G033000 Sobic008G033000 Sobic004G189800--Sobic008G033000 Sobic001G207800 Sobic001G207800 Sobic002G382700--Sobic001G207800 Sobic002G382700--Sobic001G258200 Sobic006G090100 Sobic006G090100 Sobic002G382700--Sobic006G090100 Sobic003G341300 Sobic003G341300 Sobic002G382700--Sobic003G341300 Sobic001G283100 Sobic001G283100 Sobic002G382700--Sobic001G283100 Sobic007G058100 Sobic007G058100 Sobic002G382700--Sobic007G058100 Sobic001G077300 Sobic001G077300 Sobic002G382700--Sobic001G077300 Sobic002G162400 Sobic002G162400 Sobic002G382700--Sobic002G162400 Sobic007G227100 Sobic007G227100 Sobic002G382700--Sobic007G227100 Sobic001G359300 Sobic001G359300 Sobic001G333800--Sobic001G359300 Sobic001G333800--Sobic005G106600 Sobic009G093100 Sobic009G093100 Sobic001G333800--Sobic009G093100 Sobic001G333800--Sobic006G090100 Sobic001G303200 Sobic001G303200 Sobic001G333800--Sobic001G303200 Sobic001G333800--Sobic003G220100 Sobic001G333800--Sobic009G038900 Sobic009G073900 Sobic009G073900 Sobic001G333800--Sobic009G073900 Sobic001G333800--Sobic001G077300 Sobic009G194500 Sobic009G194500 Sobic002G119100--Sobic009G194500 Sobic004G322600 Sobic004G322600 Sobic002G119100--Sobic004G322600 Sobic006G161500 Sobic006G161500 Sobic002G119100--Sobic006G161500 Sobic002G119100--Sobic008G038500 Sobic004G127800 Sobic004G127800 Sobic002G119100--Sobic004G127800 Sobic001G244600 Sobic001G244600 Sobic002G119100--Sobic001G244600 Sobic002G119100--Sobic004G322700 Sobic002G119100--Sobic007G227100 Sobic002G293500 Sobic002G293500 Sobic002G119100--Sobic002G293500 Sobic009G038900--Sobic004G281800 Sobic009G038900--Sobic005G101200 Sobic009G038900--Sobic005G106600 Sobic009G038900--Sobic005G068700 Sobic004G042200 Sobic004G042200 Sobic009G038900--Sobic004G042200 Sobic009G038900--Sobic003G220100 Sobic009G038900--Sobic001G333800 Sobic009G038900--Sobic001G359300 Sobic009G038900--Sobic010G085100
Octagon: transcription factors


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