Gene annotation
Transcriptome id Sobic.003G021100.6,Sobic.003G021100.9,Sobic.003G021100.8,Sobic.003G021100.2,Sobic.003G021100.5,Sobic.003G021100.3,Sobic.003G021100.4,Sobic.003G021100.7
Synonym Sb03g001770
Functional annotation expressed protein
UniProt A0A1W0VVJ3 , A0A1W0VVF1 , A0A1B6Q0X7 , A0A1W0VVH1
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g11850.1 : expressed protein
MaizeGDB (Corn) Zm00025a035921
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.003G021100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G275700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
2 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
3 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
4 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
5 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
6 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -
7 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
8 Sobic.004G027600 expressed protein -
9 Sobic.008G130000 PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G194300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fringe-related protein, putative, expressed -
11 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
12 Sobic.007G047400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@MYB family transcription factor, putative, expressed K12133: MYB-related transcription factor LHY
13 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
15 Sobic.001G446100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
17 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
18 Sobic.001G333800 MYB family transcription factor, putative, expressed -
19 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein


Gene co-expression network
sample Sobic003G021100 Sobic003G021100 Sobic010G275700 Sobic010G275700 Sobic003G021100--Sobic010G275700 Sobic005G101200 Sobic005G101200 Sobic003G021100--Sobic005G101200 Sobic004G281800 Sobic004G281800 Sobic003G021100--Sobic004G281800 Sobic004G189800 Sobic004G189800 Sobic003G021100--Sobic004G189800 Sobic009G038900 Sobic009G038900 Sobic003G021100--Sobic009G038900 Sobic010G251700 Sobic010G251700 Sobic003G021100--Sobic010G251700 Sobic010G085100 Sobic010G085100 Sobic003G021100--Sobic010G085100 Sobic004G027600 Sobic004G027600 Sobic003G021100--Sobic004G027600 Sobic008G130000 Sobic008G130000 Sobic003G021100--Sobic008G130000 Sobic010G275700--Sobic003G021100 Sobic010G275700--Sobic005G101200 Sobic010G275700--Sobic004G281800 Sobic001G352400 Sobic001G352400 Sobic010G275700--Sobic001G352400 Sobic010G275700--Sobic004G189800 Sobic002G382700 Sobic002G382700 Sobic010G275700--Sobic002G382700 Sobic001G333800 Sobic001G333800 Sobic010G275700--Sobic001G333800 Sobic002G119100 Sobic002G119100 Sobic010G275700--Sobic002G119100 Sobic010G275700--Sobic009G038900 Sobic005G101200--Sobic004G189800 Sobic005G068700 Sobic005G068700 Sobic005G101200--Sobic005G068700 Sobic002G404800 Sobic002G404800 Sobic005G101200--Sobic002G404800 Sobic001G258200 Sobic001G258200 Sobic005G101200--Sobic001G258200 Sobic005G101200--Sobic009G038900 Sobic007G105500 Sobic007G105500 Sobic005G101200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic005G101200--Sobic003G185900 Sobic005G101200--Sobic010G085100 Sobic005G101200--Sobic004G281800 Sobic004G281800--Sobic009G038900 Sobic004G281800--Sobic005G101200 Sobic004G281800--Sobic001G352400 Sobic004G281800--Sobic010G275700 Sobic004G281800--Sobic003G021100 Sobic004G281800--Sobic002G382700 Sobic005G106600 Sobic005G106600 Sobic004G281800--Sobic005G106600 Sobic004G312600 Sobic004G312600 Sobic004G281800--Sobic004G312600 Sobic003G220100 Sobic003G220100 Sobic004G281800--Sobic003G220100 Sobic004G189800--Sobic005G101200 Sobic004G189800--Sobic001G258200 Sobic004G189800--Sobic004G027600 Sobic009G256100 Sobic009G256100 Sobic004G189800--Sobic009G256100 Sobic004G189800--Sobic003G185900 Sobic004G189800--Sobic005G068700 Sobic004G189800--Sobic002G404800 Sobic004G189800--Sobic002G382700 Sobic008G033000 Sobic008G033000 Sobic004G189800--Sobic008G033000 Sobic009G038900--Sobic004G281800 Sobic009G038900--Sobic005G101200 Sobic009G038900--Sobic005G106600 Sobic009G038900--Sobic005G068700 Sobic004G042200 Sobic004G042200 Sobic009G038900--Sobic004G042200 Sobic009G038900--Sobic003G220100 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic009G038900--Sobic010G085100 Sobic010G251700--Sobic004G027600 Sobic005G231500 Sobic005G231500 Sobic010G251700--Sobic005G231500 Sobic004G112100 Sobic004G112100 Sobic010G251700--Sobic004G112100 Sobic004G356400 Sobic004G356400 Sobic010G251700--Sobic004G356400 Sobic001G446100 Sobic001G446100 Sobic010G251700--Sobic001G446100 Sobic010G251700--Sobic004G189800 Sobic010G251700--Sobic003G021100 Sobic001G329400 Sobic001G329400 Sobic010G251700--Sobic001G329400 Sobic007G142200 Sobic007G142200 Sobic010G251700--Sobic007G142200 Sobic010G085100--Sobic005G101200 Sobic010G085100--Sobic003G185900 Sobic010G085100--Sobic007G105500 Sobic010G085100--Sobic002G404800 Sobic004G215800 Sobic004G215800 Sobic010G085100--Sobic004G215800 Sobic008G140200 Sobic008G140200 Sobic010G085100--Sobic008G140200 Sobic003G036200 Sobic003G036200 Sobic010G085100--Sobic003G036200 Sobic010G085100--Sobic008G033000 Sobic004G154200 Sobic004G154200 Sobic010G085100--Sobic004G154200 Sobic004G027600--Sobic004G189800 Sobic004G027600--Sobic003G185900 Sobic004G027600--Sobic010G251700 Sobic004G027600--Sobic004G112100 Sobic009G237100 Sobic009G237100 Sobic004G027600--Sobic009G237100 Sobic010G067100 Sobic010G067100 Sobic004G027600--Sobic010G067100 Sobic004G027600--Sobic010G085100 Sobic004G027600--Sobic001G258200 Sobic004G027600--Sobic005G101200 Sobic010G176200 Sobic010G176200 Sobic008G130000--Sobic010G176200 Sobic008G130000--Sobic004G356400 Sobic003G160200 Sobic003G160200 Sobic008G130000--Sobic003G160200 Sobic008G130000--Sobic003G021100 Sobic008G130000--Sobic010G275700 Sobic001G303200 Sobic001G303200 Sobic008G130000--Sobic001G303200 Sobic001G168250 Sobic001G168250 Sobic008G130000--Sobic001G168250 Sobic003G229300 Sobic003G229300 Sobic008G130000--Sobic003G229300 Sobic008G130000--Sobic001G333800
Octagon: transcription factors


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