Gene annotation
Transcriptome id Sobic.004G343500.2,Sobic.004G343500.1
Synonym
Functional annotation OsCttP2 - Putative C-terminal processing peptidase homologue, expressed
UniProt A0A1Z5RQI5 , A0A194YT39
Pfam PF13180 PF03572
Panther DB PTHR32060 PTHR32060:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0008236serine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT4G17740 : Peptidase S41 family protein
RAP-DB (Rice) LOC_Os02g57060.1 : OsCttP2 - Putative C-terminal processing peptidase homologue, expressed
MaizeGDB (Corn) Zm00025a022592
Brachypodium KQJ91419 , KQJ91375
Barley HORVU5Hr1G088200.1 , HORVU5Hr1G088200.3 , HORVU5Hr1G088200.2 , HORVU5Hr1G088200.5 , HORVU5Hr1G088200.4 , HORVU5Hr1G088200.7 , HORVU5Hr1G088200.6 , HORVU5Hr1G088200.9 , HORVU5Hr1G088200.8 , HORVU5Hr1G088200.20 , HORVU5Hr1G088200.22 , HORVU5Hr1G088200.15 , HORVU5Hr1G088200.14 , HORVU5Hr1G088200.17 , HORVU5Hr1G088200.16 , HORVU5Hr1G088200.11 , HORVU5Hr1G088200.10 , HORVU5Hr1G088200.13 , HORVU5Hr1G088200.12 , HORVU5Hr1G088200.19 , HORVU5Hr1G088200.18
Wheat TraesCS5A02G356700 , TraesCS3B02G362700 , TraesCS3B02G362700 , TraesCS3B02G362700 , TraesCS3B02G362700
Populus PNT25216 , PNT25217 , PNT25214


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G273300 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
2 Sobic.009G054900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@relA-SpoT like protein RSH4, putative, expressed -
3 Sobic.001G239500 starch synthase, putative, expressed K00703: starch synthase
4 Sobic.009G249600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcriptional regulator, putative, expressed K07735: putative transcriptional regulator
5 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
6 Sobic.004G351700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ZOS2-19 - C2H2 zinc finger protein, expressed -
7 Sobic.007G047400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@MYB family transcription factor, putative, expressed K12133: MYB-related transcription factor LHY
8 Sobic.006G244000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed K17471: sulfate transporter 3
9 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
10 Sobic.003G021100 expressed protein -
11 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
12 Sobic.004G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
13 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
14 Sobic.001G484400 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
15 Sobic.001G305600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
16 Sobic.008G047000 actin, putative, expressed K10355: actin, other eukaryote
17 Sobic.004G327700 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
18 Sobic.009G015100 ACT domain containing protein, expressed -
19 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -
20 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein


Gene co-expression network
sample Sobic004G343500 Sobic004G343500 Sobic002G273300 Sobic002G273300 Sobic004G343500--Sobic002G273300 Sobic009G054900 Sobic009G054900 Sobic004G343500--Sobic009G054900 Sobic001G239500 Sobic001G239500 Sobic004G343500--Sobic001G239500 Sobic009G249600 Sobic009G249600 Sobic004G343500--Sobic009G249600 Sobic001G134100 Sobic001G134100 Sobic004G343500--Sobic001G134100 Sobic004G351700 Sobic004G351700 Sobic004G343500--Sobic004G351700 Sobic007G047400 Sobic007G047400 Sobic004G343500--Sobic007G047400 Sobic006G244000 Sobic006G244000 Sobic004G343500--Sobic006G244000 Sobic007G140800 Sobic007G140800 Sobic004G343500--Sobic007G140800 Sobic002G273300--Sobic004G343500 Sobic002G273300--Sobic007G047400 Sobic002G273300--Sobic009G249600 Sobic002G273300--Sobic001G239500 Sobic001G305600 Sobic001G305600 Sobic002G273300--Sobic001G305600 Sobic003G004200 Sobic003G004200 Sobic002G273300--Sobic003G004200 Sobic002G273300--Sobic004G351700 Sobic002G273300--Sobic009G054900 Sobic003G009700 Sobic003G009700 Sobic002G273300--Sobic003G009700 Sobic001G329400 Sobic001G329400 Sobic009G054900--Sobic001G329400 Sobic010G251700 Sobic010G251700 Sobic009G054900--Sobic010G251700 Sobic009G054900--Sobic004G343500 Sobic009G054900--Sobic007G140800 Sobic001G178250 Sobic001G178250 Sobic009G054900--Sobic001G178250 Sobic004G356400 Sobic004G356400 Sobic009G054900--Sobic004G356400 Sobic006G130300 Sobic006G130300 Sobic009G054900--Sobic006G130300 Sobic001G514800 Sobic001G514800 Sobic009G054900--Sobic001G514800 Sobic006G093800 Sobic006G093800 Sobic009G054900--Sobic006G093800 Sobic001G239500--Sobic004G343500 Sobic001G239500--Sobic002G273300 Sobic001G239500--Sobic001G514800 Sobic008G168300 Sobic008G168300 Sobic001G239500--Sobic008G168300 Sobic001G239500--Sobic003G004200 Sobic001G239500--Sobic009G054900 Sobic001G207700 Sobic001G207700 Sobic001G239500--Sobic001G207700 Sobic001G239500--Sobic009G249600 Sobic001G239500--Sobic007G047400 Sobic009G249600--Sobic002G273300 Sobic009G249600--Sobic004G351700 Sobic009G249600--Sobic006G244000 Sobic009G249600--Sobic004G343500 Sobic009G249600--Sobic003G009700 Sobic009G249600--Sobic001G239500 Sobic009G249600--Sobic001G134100 Sobic009G249600--Sobic003G004200 Sobic009G249600--Sobic009G054900 Sobic003G367500 Sobic003G367500 Sobic001G134100--Sobic003G367500 Sobic001G134100--Sobic001G329400 Sobic005G231500 Sobic005G231500 Sobic001G134100--Sobic005G231500 Sobic007G105500 Sobic007G105500 Sobic001G134100--Sobic007G105500 Sobic004G154200 Sobic004G154200 Sobic001G134100--Sobic004G154200 Sobic010G085100 Sobic010G085100 Sobic001G134100--Sobic010G085100 Sobic008G117000 Sobic008G117000 Sobic001G134100--Sobic008G117000 Sobic010G039500 Sobic010G039500 Sobic001G134100--Sobic010G039500 Sobic004G215800 Sobic004G215800 Sobic001G134100--Sobic004G215800 Sobic001G111700 Sobic001G111700 Sobic004G351700--Sobic001G111700 Sobic004G351700--Sobic009G249600 Sobic004G351700--Sobic004G343500 Sobic004G351700--Sobic002G273300 Sobic004G351700--Sobic009G054900 Sobic003G134400 Sobic003G134400 Sobic004G351700--Sobic003G134400 Sobic004G351700--Sobic006G244000 Sobic007G142200 Sobic007G142200 Sobic004G351700--Sobic007G142200 Sobic004G351700--Sobic010G251700 Sobic003G313300 Sobic003G313300 Sobic007G047400--Sobic003G313300 Sobic007G047400--Sobic002G273300 Sobic003G021100 Sobic003G021100 Sobic007G047400--Sobic003G021100 Sobic004G281800 Sobic004G281800 Sobic007G047400--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic007G047400--Sobic005G101200 Sobic005G206300 Sobic005G206300 Sobic007G047400--Sobic005G206300 Sobic010G275700 Sobic010G275700 Sobic007G047400--Sobic010G275700 Sobic010G176200 Sobic010G176200 Sobic007G047400--Sobic010G176200 Sobic001G017300 Sobic001G017300 Sobic007G047400--Sobic001G017300 Sobic006G244000--Sobic001G329400 Sobic009G048900 Sobic009G048900 Sobic006G244000--Sobic009G048900 Sobic003G256700 Sobic003G256700 Sobic006G244000--Sobic003G256700 Sobic009G104800 Sobic009G104800 Sobic006G244000--Sobic009G104800 Sobic008G104601 Sobic008G104601 Sobic006G244000--Sobic008G104601 Sobic004G125700 Sobic004G125700 Sobic006G244000--Sobic004G125700 Sobic003G431900 Sobic003G431900 Sobic006G244000--Sobic003G431900 Sobic001G406000 Sobic001G406000 Sobic006G244000--Sobic001G406000 Sobic006G244000--Sobic001G134100 Sobic006G077400 Sobic006G077400 Sobic007G140800--Sobic006G077400 Sobic003G303700 Sobic003G303700 Sobic007G140800--Sobic003G303700 Sobic010G201700 Sobic010G201700 Sobic007G140800--Sobic010G201700 Sobic003G024300 Sobic003G024300 Sobic007G140800--Sobic003G024300 Sobic010G153900 Sobic010G153900 Sobic007G140800--Sobic010G153900 Sobic007G140800--Sobic001G329400 Sobic007G009200 Sobic007G009200 Sobic007G140800--Sobic007G009200 Sobic007G140800--Sobic004G125700 Sobic009G237100 Sobic009G237100 Sobic007G140800--Sobic009G237100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.