Gene annotation
Transcriptome id Sobic.004G327700.1,Sobic.004G327700.2
Synonym Sb04g035700
Functional annotation tetratricopeptide repeat domain containing protein, putative, expressed
UniProt A0A1Z5RQ27 , A0A194YSP3
Pfam PF12807 PF13424 PF15044 PF12807 PF13424
Panther DB PTHR12601 PTHR12601:SF9
NCBI CDD -
KEGG Orthology K03255; TIF31, protein TIF31
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G28080 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g55230.1 : tetratricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022442
Brachypodium KQK01113 , KQJ84949
Barley HORVU6Hr1G084650.14 , HORVU6Hr1G084650.20 , HORVU6Hr1G084650.21 , HORVU6Hr1G084650.22 , HORVU6Hr1G084650.23 , HORVU6Hr1G084650.9 , HORVU6Hr1G084650.8 , HORVU6Hr1G084650.1 , HORVU6Hr1G084650.3 , HORVU6Hr1G084650.2 , HORVU6Hr1G084650.5 , HORVU6Hr1G084650.4 , HORVU6Hr1G084650.7 , HORVU6Hr1G084650.6 , HORVU6Hr1G084650.19 , HORVU6Hr1G084650.18 , HORVU6Hr1G084650.15 , HORVU6Hr1G084650.17 , HORVU6Hr1G084650.16 , HORVU6Hr1G084650.11 , HORVU6Hr1G084650.10 , HORVU6Hr1G084650.13 , HORVU6Hr1G084650.12
Wheat TraesCS6D02G336800 , TraesCS6B02G387400 , TraesCS6A02G354400
Populus PNS93706


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
2 Sobic.009G125400 FZL, putative, expressed -
3 Sobic.004G274100 expressed protein -
4 Sobic.001G069000 ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
5 Sobic.006G010900 expressed protein -
6 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
7 Sobic.006G016900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 27964718)@cysteine synthase, chloroplast/chromoplast precursor, putative, expressed K13034: L-3-cyanoalanine synthase/ cysteine synthase
8 Sobic.001G484400 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
9 Sobic.002G172700 Galactose mutarotase-like superfamily protein(PubMedID : 26465154)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
10 Sobic.001G415400 PsbP, putative, expressed -
11 Sobic.002G385700 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
12 Sobic.003G009700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
13 Sobic.009G113800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
14 Sobic.004G343500 OsCttP2 - Putative C-terminal processing peptidase homologue, expressed -
15 Sobic.001G536800 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
16 Sobic.003G303700 Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein -
17 Sobic.003G004200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed -
18 Sobic.001G168250 - -
19 Sobic.001G239500 starch synthase, putative, expressed K00703: starch synthase
20 Sobic.001G314200 expressed protein -


Gene co-expression network
sample Sobic004G327700 Sobic004G327700 Sobic007G140800 Sobic007G140800 Sobic004G327700--Sobic007G140800 Sobic009G125400 Sobic009G125400 Sobic004G327700--Sobic009G125400 Sobic004G274100 Sobic004G274100 Sobic004G327700--Sobic004G274100 Sobic001G069000 Sobic001G069000 Sobic004G327700--Sobic001G069000 Sobic006G010900 Sobic006G010900 Sobic004G327700--Sobic006G010900 Sobic007G009200 Sobic007G009200 Sobic004G327700--Sobic007G009200 Sobic006G016900 Sobic006G016900 Sobic004G327700--Sobic006G016900 Sobic001G484400 Sobic001G484400 Sobic004G327700--Sobic001G484400 Sobic002G172700 Sobic002G172700 Sobic004G327700--Sobic002G172700 Sobic006G077400 Sobic006G077400 Sobic007G140800--Sobic006G077400 Sobic003G303700 Sobic003G303700 Sobic007G140800--Sobic003G303700 Sobic010G201700 Sobic010G201700 Sobic007G140800--Sobic010G201700 Sobic003G024300 Sobic003G024300 Sobic007G140800--Sobic003G024300 Sobic010G153900 Sobic010G153900 Sobic007G140800--Sobic010G153900 Sobic001G329400 Sobic001G329400 Sobic007G140800--Sobic001G329400 Sobic007G140800--Sobic007G009200 Sobic004G125700 Sobic004G125700 Sobic007G140800--Sobic004G125700 Sobic009G237100 Sobic009G237100 Sobic007G140800--Sobic009G237100 Sobic009G125400--Sobic001G069000 Sobic004G308700 Sobic004G308700 Sobic009G125400--Sobic004G308700 Sobic004G272100 Sobic004G272100 Sobic009G125400--Sobic004G272100 Sobic007G004800 Sobic007G004800 Sobic009G125400--Sobic007G004800 Sobic008G021300 Sobic008G021300 Sobic009G125400--Sobic008G021300 Sobic009G125400--Sobic007G009200 Sobic001G102800 Sobic001G102800 Sobic009G125400--Sobic001G102800 Sobic009G125400--Sobic010G201700 Sobic006G272900 Sobic006G272900 Sobic009G125400--Sobic006G272900 Sobic004G274100--Sobic007G140800 Sobic004G274100--Sobic003G303700 Sobic002G098800 Sobic002G098800 Sobic004G274100--Sobic002G098800 Sobic009G113800 Sobic009G113800 Sobic004G274100--Sobic009G113800 Sobic004G274100--Sobic001G102800 Sobic004G274100--Sobic008G021300 Sobic004G274100--Sobic010G201700 Sobic004G274100--Sobic001G069000 Sobic008G188600 Sobic008G188600 Sobic004G274100--Sobic008G188600 Sobic003G412900 Sobic003G412900 Sobic001G069000--Sobic003G412900 Sobic001G069000--Sobic009G125400 Sobic001G069000--Sobic002G098800 Sobic001G069000--Sobic006G010900 Sobic001G536800 Sobic001G536800 Sobic001G069000--Sobic001G536800 Sobic001G069000--Sobic004G308700 Sobic003G387100 Sobic003G387100 Sobic001G069000--Sobic003G387100 Sobic001G314200 Sobic001G314200 Sobic001G069000--Sobic001G314200 Sobic001G069000--Sobic004G272100 Sobic006G010900--Sobic001G069000 Sobic006G010900--Sobic003G387100 Sobic006G210400 Sobic006G210400 Sobic006G010900--Sobic006G210400 Sobic003G160800 Sobic003G160800 Sobic006G010900--Sobic003G160800 Sobic007G085800 Sobic007G085800 Sobic006G010900--Sobic007G085800 Sobic006G207800 Sobic006G207800 Sobic006G010900--Sobic006G207800 Sobic008G116300 Sobic008G116300 Sobic006G010900--Sobic008G116300 Sobic003G077400 Sobic003G077400 Sobic006G010900--Sobic003G077400 Sobic006G010900--Sobic003G412900 Sobic007G009200--Sobic009G237100 Sobic007G009200--Sobic003G024300 Sobic007G009200--Sobic006G207800 Sobic003G398800 Sobic003G398800 Sobic007G009200--Sobic003G398800 Sobic006G238200 Sobic006G238200 Sobic007G009200--Sobic006G238200 Sobic007G009200--Sobic001G102800 Sobic007G009200--Sobic006G077400 Sobic007G009200--Sobic010G201700 Sobic010G035400 Sobic010G035400 Sobic007G009200--Sobic010G035400 Sobic006G016900--Sobic004G327700 Sobic007G095500 Sobic007G095500 Sobic006G016900--Sobic007G095500 Sobic001G415400 Sobic001G415400 Sobic006G016900--Sobic001G415400 Sobic001G056601 Sobic001G056601 Sobic006G016900--Sobic001G056601 Sobic006G016900--Sobic001G484400 Sobic006G016900--Sobic006G010900 Sobic006G016900--Sobic001G069000 Sobic009G196800 Sobic009G196800 Sobic006G016900--Sobic009G196800 Sobic006G016900--Sobic004G274100 Sobic001G065600 Sobic001G065600 Sobic001G484400--Sobic001G065600 Sobic001G305600 Sobic001G305600 Sobic001G484400--Sobic001G305600 Sobic001G073900 Sobic001G073900 Sobic001G484400--Sobic001G073900 Sobic008G115900 Sobic008G115900 Sobic001G484400--Sobic008G115900 Sobic003G443500 Sobic003G443500 Sobic001G484400--Sobic003G443500 Sobic001G484400--Sobic004G327700 Sobic004G347800 Sobic004G347800 Sobic001G484400--Sobic004G347800 Sobic001G484400--Sobic006G010900 Sobic008G001900 Sobic008G001900 Sobic001G484400--Sobic008G001900 Sobic007G136200 Sobic007G136200 Sobic002G172700--Sobic007G136200 Sobic002G172700--Sobic010G153900 Sobic002G172700--Sobic007G140800 Sobic002G172700--Sobic003G024300 Sobic002G172700--Sobic008G115900 Sobic009G104800 Sobic009G104800 Sobic002G172700--Sobic009G104800 Sobic002G172700--Sobic004G125700 Sobic001G514800 Sobic001G514800 Sobic002G172700--Sobic001G514800 Sobic001G468700 Sobic001G468700 Sobic002G172700--Sobic001G468700
Octagon: transcription factors


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