Gene annotation
Transcriptome id Sobic.002G172700.1
Synonym Sb02g022170
Functional annotation Galactose mutarotase-like superfamily protein (PubMedID : 26465154)
aldose 1-epimerase, putative, expressed
UniProt A0A097PMY1 , C5X9W0
Pfam PF01263
Panther DB PTHR11122 PTHR11122:SF12
NCBI CDD KOG1594; Uncharacterized enzymes related to aldose 1-epimerase
KEGG Orthology K01792; glucose-6-phosphate 1-epimerase
Gene Ontology GO:0016853; isomerase activity GO:0005975carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT5G66530 : Galactose mutarotase-like superfamily protein
RAP-DB (Rice) LOC_Os09g15820.1 : aldose 1-epimerase, putative, expressed
MaizeGDB (Corn) Zm00025a046509
Brachypodium PNT64403
Barley HORVU5Hr1G056390.8 , HORVU5Hr1G056390.4 , HORVU5Hr1G056390.5 , HORVU5Hr1G056390.6 , HORVU5Hr1G056390.1 , HORVU5Hr1G056390.2 , HORVU5Hr1G056390.7
Wheat TraesCS5A02G184500 , TraesCS5A02G184500 , TraesCS5A02G184500 , TraesCS5D02G189500 , TraesCS5B02G182500 , TraesCS5B02G182500
Populus -


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cDNA sequences
Sobic.002G172700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G136200 expressed protein -
2 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
3 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
4 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
5 Sobic.008G115900 mitochondrial carrier protein, putative, expressed -
6 Sobic.009G104800 AMP deaminase, putative, expressed K01490: AMP deaminase
7 Sobic.004G125700 isochorismatase family protein, putative, expressed -
8 Sobic.001G514800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine acetyltransferase protein, putative, expressed K00640: serine O-acetyltransferase
9 Sobic.001G468700 expressed protein -
10 Sobic.004G154200 expressed protein -
11 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
12 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
13 Sobic.008G188600 glyoxalase family protein, putative, expressed -
14 Sobic.006G158100 tRNA-dihydrouridine synthase, putative, expressed K05543: tRNA-dihydrouridine synthase 2
15 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
16 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
17 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
18 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
19 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
20 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7


Gene co-expression network
sample Sobic002G172700 Sobic002G172700 Sobic007G136200 Sobic007G136200 Sobic002G172700--Sobic007G136200 Sobic010G153900 Sobic010G153900 Sobic002G172700--Sobic010G153900 Sobic007G140800 Sobic007G140800 Sobic002G172700--Sobic007G140800 Sobic003G024300 Sobic003G024300 Sobic002G172700--Sobic003G024300 Sobic008G115900 Sobic008G115900 Sobic002G172700--Sobic008G115900 Sobic009G104800 Sobic009G104800 Sobic002G172700--Sobic009G104800 Sobic004G125700 Sobic004G125700 Sobic002G172700--Sobic004G125700 Sobic001G514800 Sobic001G514800 Sobic002G172700--Sobic001G514800 Sobic001G468700 Sobic001G468700 Sobic002G172700--Sobic001G468700 Sobic006G158100 Sobic006G158100 Sobic007G136200--Sobic006G158100 Sobic010G043800 Sobic010G043800 Sobic007G136200--Sobic010G043800 Sobic001G504400 Sobic001G504400 Sobic007G136200--Sobic001G504400 Sobic010G002700 Sobic010G002700 Sobic007G136200--Sobic010G002700 Sobic007G103400 Sobic007G103400 Sobic007G136200--Sobic007G103400 Sobic001G169900 Sobic001G169900 Sobic007G136200--Sobic001G169900 Sobic004G337400 Sobic004G337400 Sobic007G136200--Sobic004G337400 Sobic007G108900 Sobic007G108900 Sobic007G136200--Sobic007G108900 Sobic001G378100 Sobic001G378100 Sobic007G136200--Sobic001G378100 Sobic010G153900--Sobic007G140800 Sobic008G188600 Sobic008G188600 Sobic010G153900--Sobic008G188600 Sobic009G043000 Sobic009G043000 Sobic010G153900--Sobic009G043000 Sobic010G201700 Sobic010G201700 Sobic010G153900--Sobic010G201700 Sobic003G303700 Sobic003G303700 Sobic010G153900--Sobic003G303700 Sobic010G095000 Sobic010G095000 Sobic010G153900--Sobic010G095000 Sobic006G207800 Sobic006G207800 Sobic010G153900--Sobic006G207800 Sobic003G241900 Sobic003G241900 Sobic010G153900--Sobic003G241900 Sobic001G020100 Sobic001G020100 Sobic010G153900--Sobic001G020100 Sobic006G077400 Sobic006G077400 Sobic007G140800--Sobic006G077400 Sobic007G140800--Sobic003G303700 Sobic007G140800--Sobic010G201700 Sobic007G140800--Sobic003G024300 Sobic007G140800--Sobic010G153900 Sobic001G329400 Sobic001G329400 Sobic007G140800--Sobic001G329400 Sobic007G009200 Sobic007G009200 Sobic007G140800--Sobic007G009200 Sobic007G140800--Sobic004G125700 Sobic009G237100 Sobic009G237100 Sobic007G140800--Sobic009G237100 Sobic003G024300--Sobic007G009200 Sobic003G024300--Sobic006G077400 Sobic003G024300--Sobic001G329400 Sobic001G491000 Sobic001G491000 Sobic003G024300--Sobic001G491000 Sobic003G024300--Sobic009G104800 Sobic003G398800 Sobic003G398800 Sobic003G024300--Sobic003G398800 Sobic003G024300--Sobic004G125700 Sobic007G161500 Sobic007G161500 Sobic003G024300--Sobic007G161500 Sobic003G024300--Sobic010G201700 Sobic008G115900--Sobic007G136200 Sobic008G115900--Sobic006G158100 Sobic006G130300 Sobic006G130300 Sobic008G115900--Sobic006G130300 Sobic008G115900--Sobic006G207800 Sobic004G356400 Sobic004G356400 Sobic008G115900--Sobic004G356400 Sobic001G017300 Sobic001G017300 Sobic008G115900--Sobic001G017300 Sobic008G115900--Sobic010G153900 Sobic003G229300 Sobic003G229300 Sobic008G115900--Sobic003G229300 Sobic008G115900--Sobic001G491000 Sobic009G104800--Sobic004G125700 Sobic009G104800--Sobic003G024300 Sobic009G104800--Sobic001G329400 Sobic009G104800--Sobic006G077400 Sobic006G244000 Sobic006G244000 Sobic009G104800--Sobic006G244000 Sobic009G104800--Sobic007G140800 Sobic003G256700 Sobic003G256700 Sobic009G104800--Sobic003G256700 Sobic009G104800--Sobic007G161500 Sobic009G104800--Sobic010G095000 Sobic004G125700--Sobic009G104800 Sobic004G125700--Sobic003G024300 Sobic004G125700--Sobic007G140800 Sobic004G125700--Sobic001G329400 Sobic004G125700--Sobic006G077400 Sobic004G125700--Sobic010G201700 Sobic003G431900 Sobic003G431900 Sobic004G125700--Sobic003G431900 Sobic004G125700--Sobic006G244000 Sobic004G272100 Sobic004G272100 Sobic004G125700--Sobic004G272100 Sobic001G514800--Sobic001G017300 Sobic001G239500 Sobic001G239500 Sobic001G514800--Sobic001G239500 Sobic001G514800--Sobic002G172700 Sobic009G054900 Sobic009G054900 Sobic001G514800--Sobic009G054900 Sobic001G514800--Sobic001G020100 Sobic004G035900 Sobic004G035900 Sobic001G514800--Sobic004G035900 Sobic001G514800--Sobic006G130300 Sobic001G514800--Sobic004G356400 Sobic001G514800--Sobic007G136200 Sobic001G468700--Sobic010G002700 Sobic003G017100 Sobic003G017100 Sobic001G468700--Sobic003G017100 Sobic004G028500 Sobic004G028500 Sobic001G468700--Sobic004G028500 Sobic001G468700--Sobic001G017300 Sobic009G121000 Sobic009G121000 Sobic001G468700--Sobic009G121000 Sobic003G247400 Sobic003G247400 Sobic001G468700--Sobic003G247400 Sobic003G313300 Sobic003G313300 Sobic001G468700--Sobic003G313300 Sobic003G276300 Sobic003G276300 Sobic001G468700--Sobic003G276300 Sobic003G004200 Sobic003G004200 Sobic001G468700--Sobic003G004200
Octagon: transcription factors


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