Gene annotation
Transcriptome id Sobic.002G273300.1
Synonym SbBBX3, B-box (BBX) protein, Sb02g030690, SbBBX3;B-box (BBX) protein
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
B-box zinc finger family protein, putative, expressed
UniProt C5X660
Pfam PF00643
Panther DB PTHR31832 PTHR31832:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT4G38960 : B-box type zinc finger family protein
RAP-DB (Rice) LOC_Os09g35880.1 : B-box zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a047769 , Zm00025a014417
Brachypodium PNT65006 , KQJ91156
Barley HORVU5Hr1G081190.2 , HORVU5Hr1G081190.3 , HORVU5Hr1G081190.1
Wheat TraesCS5A02G317100 , TraesCS5D02G323400 , TraesCS5B02G317700
Populus -


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cDNA sequences
Sobic.002G273300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G343500 OsCttP2 - Putative C-terminal processing peptidase homologue, expressed -
2 Sobic.007G047400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@MYB family transcription factor, putative, expressed K12133: MYB-related transcription factor LHY
3 Sobic.009G249600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcriptional regulator, putative, expressed K07735: putative transcriptional regulator
4 Sobic.001G239500 starch synthase, putative, expressed K00703: starch synthase
5 Sobic.001G305600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
6 Sobic.003G004200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed -
7 Sobic.004G351700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ZOS2-19 - C2H2 zinc finger protein, expressed -
8 Sobic.009G054900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@relA-SpoT like protein RSH4, putative, expressed -
9 Sobic.003G009700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
10 Sobic.004G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
11 Sobic.008G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
12 Sobic.005G045000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
13 Sobic.009G015100 ACT domain containing protein, expressed -
14 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
15 Sobic.004G032400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@L-aspartate oxidase 1, putative, expressed K00278: L-aspartate oxidase
16 Sobic.006G205100 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.003G021100 expressed protein -
18 Sobic.005G206300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATA15 protein, putative, expressed -
19 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.008G047000 actin, putative, expressed K10355: actin, other eukaryote


Gene co-expression network
sample Sobic002G273300 Sobic002G273300 Sobic004G343500 Sobic004G343500 Sobic002G273300--Sobic004G343500 Sobic007G047400 Sobic007G047400 Sobic002G273300--Sobic007G047400 Sobic009G249600 Sobic009G249600 Sobic002G273300--Sobic009G249600 Sobic001G239500 Sobic001G239500 Sobic002G273300--Sobic001G239500 Sobic001G305600 Sobic001G305600 Sobic002G273300--Sobic001G305600 Sobic003G004200 Sobic003G004200 Sobic002G273300--Sobic003G004200 Sobic004G351700 Sobic004G351700 Sobic002G273300--Sobic004G351700 Sobic009G054900 Sobic009G054900 Sobic002G273300--Sobic009G054900 Sobic003G009700 Sobic003G009700 Sobic002G273300--Sobic003G009700 Sobic004G343500--Sobic002G273300 Sobic004G343500--Sobic009G054900 Sobic004G343500--Sobic001G239500 Sobic004G343500--Sobic009G249600 Sobic001G134100 Sobic001G134100 Sobic004G343500--Sobic001G134100 Sobic004G343500--Sobic004G351700 Sobic004G343500--Sobic007G047400 Sobic006G244000 Sobic006G244000 Sobic004G343500--Sobic006G244000 Sobic007G140800 Sobic007G140800 Sobic004G343500--Sobic007G140800 Sobic003G313300 Sobic003G313300 Sobic007G047400--Sobic003G313300 Sobic007G047400--Sobic002G273300 Sobic003G021100 Sobic003G021100 Sobic007G047400--Sobic003G021100 Sobic004G281800 Sobic004G281800 Sobic007G047400--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic007G047400--Sobic005G101200 Sobic005G206300 Sobic005G206300 Sobic007G047400--Sobic005G206300 Sobic010G275700 Sobic010G275700 Sobic007G047400--Sobic010G275700 Sobic010G176200 Sobic010G176200 Sobic007G047400--Sobic010G176200 Sobic001G017300 Sobic001G017300 Sobic007G047400--Sobic001G017300 Sobic009G249600--Sobic002G273300 Sobic009G249600--Sobic004G351700 Sobic009G249600--Sobic006G244000 Sobic009G249600--Sobic004G343500 Sobic009G249600--Sobic003G009700 Sobic009G249600--Sobic001G239500 Sobic009G249600--Sobic001G134100 Sobic009G249600--Sobic003G004200 Sobic009G249600--Sobic009G054900 Sobic001G239500--Sobic004G343500 Sobic001G239500--Sobic002G273300 Sobic001G514800 Sobic001G514800 Sobic001G239500--Sobic001G514800 Sobic008G168300 Sobic008G168300 Sobic001G239500--Sobic008G168300 Sobic001G239500--Sobic003G004200 Sobic001G239500--Sobic009G054900 Sobic001G207700 Sobic001G207700 Sobic001G239500--Sobic001G207700 Sobic001G239500--Sobic009G249600 Sobic001G239500--Sobic007G047400 Sobic004G347800 Sobic004G347800 Sobic001G305600--Sobic004G347800 Sobic005G045000 Sobic005G045000 Sobic001G305600--Sobic005G045000 Sobic006G064100 Sobic006G064100 Sobic001G305600--Sobic006G064100 Sobic001G305600--Sobic002G273300 Sobic001G484400 Sobic001G484400 Sobic001G305600--Sobic001G484400 Sobic001G305600--Sobic008G168300 Sobic001G531500 Sobic001G531500 Sobic001G305600--Sobic001G531500 Sobic003G418100 Sobic003G418100 Sobic001G305600--Sobic003G418100 Sobic001G305600--Sobic010G176200 Sobic001G468700 Sobic001G468700 Sobic003G004200--Sobic001G468700 Sobic003G004200--Sobic003G009700 Sobic004G028500 Sobic004G028500 Sobic003G004200--Sobic004G028500 Sobic001G065600 Sobic001G065600 Sobic003G004200--Sobic001G065600 Sobic004G356400 Sobic004G356400 Sobic003G004200--Sobic004G356400 Sobic003G004200--Sobic003G313300 Sobic003G004200--Sobic005G045000 Sobic003G004200--Sobic005G206300 Sobic003G004200--Sobic001G017300 Sobic001G111700 Sobic001G111700 Sobic004G351700--Sobic001G111700 Sobic004G351700--Sobic009G249600 Sobic004G351700--Sobic004G343500 Sobic004G351700--Sobic002G273300 Sobic004G351700--Sobic009G054900 Sobic003G134400 Sobic003G134400 Sobic004G351700--Sobic003G134400 Sobic004G351700--Sobic006G244000 Sobic007G142200 Sobic007G142200 Sobic004G351700--Sobic007G142200 Sobic010G251700 Sobic010G251700 Sobic004G351700--Sobic010G251700 Sobic001G329400 Sobic001G329400 Sobic009G054900--Sobic001G329400 Sobic009G054900--Sobic010G251700 Sobic009G054900--Sobic004G343500 Sobic009G054900--Sobic007G140800 Sobic001G178250 Sobic001G178250 Sobic009G054900--Sobic001G178250 Sobic009G054900--Sobic004G356400 Sobic006G130300 Sobic006G130300 Sobic009G054900--Sobic006G130300 Sobic009G054900--Sobic001G514800 Sobic006G093800 Sobic006G093800 Sobic009G054900--Sobic006G093800 Sobic006G225200 Sobic006G225200 Sobic003G009700--Sobic006G225200 Sobic003G009700--Sobic003G004200 Sobic003G009700--Sobic009G249600 Sobic003G009700--Sobic002G273300 Sobic004G327700 Sobic004G327700 Sobic003G009700--Sobic004G327700 Sobic003G009700--Sobic005G045000 Sobic001G484800 Sobic001G484800 Sobic003G009700--Sobic001G484800 Sobic003G009700--Sobic001G239500 Sobic003G009700--Sobic001G207700
Octagon: transcription factors


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