Gene annotation
Transcriptome id Sobic.009G054900.1
Synonym CRSH, Sb09g004640, ATCRSH
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
relA-SpoT like protein RSH4, putative, expressed
UniProt C5Z0N7
Pfam PF13499 PF13328 PF04607
Panther DB PTHR21262 PTHR21262:SF12
NCBI CDD KOG1157; Predicted guanosine polyphosphate pyrophosphohydrolase/synthase
KEGG Orthology -
Gene Ontology GO:0015969; guanosine tetraphosphate metabolic process


Orthologs (automatic annotation)
TAIR AT3G17470 : Ca2+-activated RelA/spot homolog
RAP-DB (Rice) LOC_Os05g06890.1 : relA-SpoT like protein RSH4, putative, expressed
MaizeGDB (Corn) Zm00025a042946
Brachypodium KQK07352 , PNT71734
Barley HORVU1Hr1G023690.5 , HORVU1Hr1G023690.4 , HORVU1Hr1G023690.1 , HORVU1Hr1G023690.3 , HORVU1Hr1G023690.2
Wheat TraesCS1A02G105300 , TraesCS1D02G109900 , TraesCS1B02G130800 , TraesCS1B02G130800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
2 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -
3 Sobic.004G343500 OsCttP2 - Putative C-terminal processing peptidase homologue, expressed -
4 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
5 Sobic.001G178250 - -
6 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.006G130300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
8 Sobic.001G514800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine acetyltransferase protein, putative, expressed K00640: serine O-acetyltransferase
9 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
10 Sobic.008G130000 PPR repeat domain containing protein, putative, expressed -
11 Sobic.004G027600 expressed protein -
12 Sobic.001G100000 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
13 Sobic.008G115900 mitochondrial carrier protein, putative, expressed -
14 Sobic.006G244000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed K17471: sulfate transporter 3
15 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
16 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
17 Sobic.009G113800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
18 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
19 Sobic.003G021100 expressed protein -
20 Sobic.005G231500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed -


Gene co-expression network
sample Sobic009G054900 Sobic009G054900 Sobic001G329400 Sobic001G329400 Sobic009G054900--Sobic001G329400 Sobic010G251700 Sobic010G251700 Sobic009G054900--Sobic010G251700 Sobic004G343500 Sobic004G343500 Sobic009G054900--Sobic004G343500 Sobic007G140800 Sobic007G140800 Sobic009G054900--Sobic007G140800 Sobic001G178250 Sobic001G178250 Sobic009G054900--Sobic001G178250 Sobic004G356400 Sobic004G356400 Sobic009G054900--Sobic004G356400 Sobic006G130300 Sobic006G130300 Sobic009G054900--Sobic006G130300 Sobic001G514800 Sobic001G514800 Sobic009G054900--Sobic001G514800 Sobic006G093800 Sobic006G093800 Sobic009G054900--Sobic006G093800 Sobic003G024300 Sobic003G024300 Sobic001G329400--Sobic003G024300 Sobic007G161500 Sobic007G161500 Sobic001G329400--Sobic007G161500 Sobic006G244000 Sobic006G244000 Sobic001G329400--Sobic006G244000 Sobic003G127800 Sobic003G127800 Sobic001G329400--Sobic003G127800 Sobic009G129300 Sobic009G129300 Sobic001G329400--Sobic009G129300 Sobic001G329400--Sobic007G140800 Sobic004G283100 Sobic004G283100 Sobic001G329400--Sobic004G283100 Sobic001G491000 Sobic001G491000 Sobic001G329400--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic001G329400--Sobic009G104800 Sobic004G027600 Sobic004G027600 Sobic010G251700--Sobic004G027600 Sobic005G231500 Sobic005G231500 Sobic010G251700--Sobic005G231500 Sobic004G112100 Sobic004G112100 Sobic010G251700--Sobic004G112100 Sobic010G251700--Sobic004G356400 Sobic001G446100 Sobic001G446100 Sobic010G251700--Sobic001G446100 Sobic004G189800 Sobic004G189800 Sobic010G251700--Sobic004G189800 Sobic003G021100 Sobic003G021100 Sobic010G251700--Sobic003G021100 Sobic010G251700--Sobic001G329400 Sobic007G142200 Sobic007G142200 Sobic010G251700--Sobic007G142200 Sobic002G273300 Sobic002G273300 Sobic004G343500--Sobic002G273300 Sobic004G343500--Sobic009G054900 Sobic001G239500 Sobic001G239500 Sobic004G343500--Sobic001G239500 Sobic009G249600 Sobic009G249600 Sobic004G343500--Sobic009G249600 Sobic001G134100 Sobic001G134100 Sobic004G343500--Sobic001G134100 Sobic004G351700 Sobic004G351700 Sobic004G343500--Sobic004G351700 Sobic007G047400 Sobic007G047400 Sobic004G343500--Sobic007G047400 Sobic004G343500--Sobic006G244000 Sobic004G343500--Sobic007G140800 Sobic006G077400 Sobic006G077400 Sobic007G140800--Sobic006G077400 Sobic003G303700 Sobic003G303700 Sobic007G140800--Sobic003G303700 Sobic010G201700 Sobic010G201700 Sobic007G140800--Sobic010G201700 Sobic007G140800--Sobic003G024300 Sobic010G153900 Sobic010G153900 Sobic007G140800--Sobic010G153900 Sobic007G140800--Sobic001G329400 Sobic007G009200 Sobic007G009200 Sobic007G140800--Sobic007G009200 Sobic004G125700 Sobic004G125700 Sobic007G140800--Sobic004G125700 Sobic009G237100 Sobic009G237100 Sobic007G140800--Sobic009G237100 Sobic001G178250--Sobic001G329400 Sobic001G178250--Sobic003G127800 Sobic001G178250--Sobic009G129300 Sobic004G151800 Sobic004G151800 Sobic001G178250--Sobic004G151800 Sobic001G178250--Sobic007G161500 Sobic001G178250--Sobic004G027600 Sobic001G178250--Sobic009G054900 Sobic001G178250--Sobic001G491000 Sobic001G178250--Sobic004G112100 Sobic001G017300 Sobic001G017300 Sobic004G356400--Sobic001G017300 Sobic005G101200 Sobic005G101200 Sobic004G356400--Sobic005G101200 Sobic006G158100 Sobic006G158100 Sobic004G356400--Sobic006G158100 Sobic003G185900 Sobic003G185900 Sobic004G356400--Sobic003G185900 Sobic007G105500 Sobic007G105500 Sobic004G356400--Sobic007G105500 Sobic001G303200 Sobic001G303200 Sobic004G356400--Sobic001G303200 Sobic004G356400--Sobic009G237100 Sobic004G356400--Sobic004G189800 Sobic001G258200 Sobic001G258200 Sobic004G356400--Sobic001G258200 Sobic001G100000 Sobic001G100000 Sobic006G130300--Sobic001G100000 Sobic006G238200 Sobic006G238200 Sobic006G130300--Sobic006G238200 Sobic006G130300--Sobic007G140800 Sobic001G020100 Sobic001G020100 Sobic006G130300--Sobic001G020100 Sobic006G130300--Sobic001G329400 Sobic006G130300--Sobic001G491000 Sobic006G130300--Sobic004G283100 Sobic008G115900 Sobic008G115900 Sobic006G130300--Sobic008G115900 Sobic006G207800 Sobic006G207800 Sobic006G130300--Sobic006G207800 Sobic001G514800--Sobic001G017300 Sobic001G514800--Sobic001G239500 Sobic002G172700 Sobic002G172700 Sobic001G514800--Sobic002G172700 Sobic001G514800--Sobic009G054900 Sobic001G514800--Sobic001G020100 Sobic004G035900 Sobic004G035900 Sobic001G514800--Sobic004G035900 Sobic001G514800--Sobic006G130300 Sobic001G514800--Sobic004G356400 Sobic007G136200 Sobic007G136200 Sobic001G514800--Sobic007G136200 Sobic006G093800--Sobic001G017300 Sobic010G249700 Sobic010G249700 Sobic006G093800--Sobic010G249700 Sobic006G093800--Sobic004G356400 Sobic006G093800--Sobic001G134100 Sobic006G093800--Sobic005G101200 Sobic010G085100 Sobic010G085100 Sobic006G093800--Sobic010G085100 Sobic006G093800--Sobic004G189800 Sobic006G093800--Sobic004G027600 Sobic006G093800--Sobic007G136200
Octagon: transcription factors


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