Gene annotation
Transcriptome id Sobic.004G317500.3
Synonym Sb04g034850
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pathogenesis-related Bet v I family protein, putative, expressed
UniProt C5XTL1
Pfam PF00407
Panther DB PTHR31213 PTHR31213:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009607; response to biotic stimulus GO:0006952defense response


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g50700.1 : pathogenesis-related Bet v I family protein, putative, expressed
MaizeGDB (Corn) Zm00025a046189
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
2 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -
3 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
4 Sobic.004G027600 expressed protein -
5 Sobic.008G047000 actin, putative, expressed K10355: actin, other eukaryote
6 Sobic.002G324500 PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase
7 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
8 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
9 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
10 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
11 Sobic.001G446100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
13 Sobic.001G129000 DnaK family protein, putative, expressed -
14 Sobic.010G205100 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
15 Sobic.007G142200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
16 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
17 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
18 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
19 Sobic.009G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
20 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G317500 Sobic004G317500 Sobic006G120500 Sobic006G120500 Sobic004G317500--Sobic006G120500 Sobic010G251700 Sobic010G251700 Sobic004G317500--Sobic010G251700 Sobic006G064100 Sobic006G064100 Sobic004G317500--Sobic006G064100 Sobic004G027600 Sobic004G027600 Sobic004G317500--Sobic004G027600 Sobic008G047000 Sobic008G047000 Sobic004G317500--Sobic008G047000 Sobic002G324500 Sobic002G324500 Sobic004G317500--Sobic002G324500 Sobic002G403600 Sobic002G403600 Sobic004G317500--Sobic002G403600 Sobic004G112100 Sobic004G112100 Sobic004G317500--Sobic004G112100 Sobic002G404800 Sobic002G404800 Sobic004G317500--Sobic002G404800 Sobic006G120500--Sobic004G317500 Sobic008G033200 Sobic008G033200 Sobic006G120500--Sobic008G033200 Sobic006G120500--Sobic002G324500 Sobic005G001700 Sobic005G001700 Sobic006G120500--Sobic005G001700 Sobic006G120500--Sobic004G027600 Sobic006G120500--Sobic002G403600 Sobic003G036200 Sobic003G036200 Sobic006G120500--Sobic003G036200 Sobic006G120500--Sobic006G064100 Sobic010G085100 Sobic010G085100 Sobic006G120500--Sobic010G085100 Sobic010G251700--Sobic004G027600 Sobic005G231500 Sobic005G231500 Sobic010G251700--Sobic005G231500 Sobic010G251700--Sobic004G112100 Sobic004G356400 Sobic004G356400 Sobic010G251700--Sobic004G356400 Sobic001G446100 Sobic001G446100 Sobic010G251700--Sobic001G446100 Sobic004G189800 Sobic004G189800 Sobic010G251700--Sobic004G189800 Sobic003G021100 Sobic003G021100 Sobic010G251700--Sobic003G021100 Sobic001G329400 Sobic001G329400 Sobic010G251700--Sobic001G329400 Sobic007G142200 Sobic007G142200 Sobic010G251700--Sobic007G142200 Sobic010G205100 Sobic010G205100 Sobic006G064100--Sobic010G205100 Sobic001G531500 Sobic001G531500 Sobic006G064100--Sobic001G531500 Sobic006G064100--Sobic002G403600 Sobic001G073900 Sobic001G073900 Sobic006G064100--Sobic001G073900 Sobic006G064100--Sobic006G120500 Sobic006G064100--Sobic004G317500 Sobic001G305600 Sobic001G305600 Sobic006G064100--Sobic001G305600 Sobic006G064100--Sobic003G036200 Sobic006G064100--Sobic010G085100 Sobic004G027600--Sobic004G189800 Sobic003G185900 Sobic003G185900 Sobic004G027600--Sobic003G185900 Sobic004G027600--Sobic010G251700 Sobic004G027600--Sobic004G112100 Sobic009G237100 Sobic009G237100 Sobic004G027600--Sobic009G237100 Sobic010G067100 Sobic010G067100 Sobic004G027600--Sobic010G067100 Sobic004G027600--Sobic010G085100 Sobic001G258200 Sobic001G258200 Sobic004G027600--Sobic001G258200 Sobic005G101200 Sobic005G101200 Sobic004G027600--Sobic005G101200 Sobic001G134100 Sobic001G134100 Sobic008G047000--Sobic001G134100 Sobic008G047000--Sobic004G317500 Sobic004G347800 Sobic004G347800 Sobic008G047000--Sobic004G347800 Sobic008G047000--Sobic010G085100 Sobic008G047000--Sobic006G064100 Sobic008G047000--Sobic001G073900 Sobic008G047000--Sobic006G120500 Sobic001G425150 Sobic001G425150 Sobic008G047000--Sobic001G425150 Sobic006G093800 Sobic006G093800 Sobic008G047000--Sobic006G093800 Sobic003G367500 Sobic003G367500 Sobic002G324500--Sobic003G367500 Sobic003G234200 Sobic003G234200 Sobic002G324500--Sobic003G234200 Sobic008G117000 Sobic008G117000 Sobic002G324500--Sobic008G117000 Sobic003G431900 Sobic003G431900 Sobic002G324500--Sobic003G431900 Sobic004G215800 Sobic004G215800 Sobic002G324500--Sobic004G215800 Sobic003G256700 Sobic003G256700 Sobic002G324500--Sobic003G256700 Sobic007G009200 Sobic007G009200 Sobic002G324500--Sobic007G009200 Sobic003G024300 Sobic003G024300 Sobic002G324500--Sobic003G024300 Sobic005G089600 Sobic005G089600 Sobic002G324500--Sobic005G089600 Sobic002G403600--Sobic001G531500 Sobic002G403600--Sobic004G027600 Sobic002G403600--Sobic006G064100 Sobic002G403600--Sobic001G073900 Sobic002G403600--Sobic004G356400 Sobic002G403600--Sobic003G036200 Sobic002G403600--Sobic006G120500 Sobic002G403600--Sobic005G001700 Sobic002G403600--Sobic010G251700 Sobic006G153400 Sobic006G153400 Sobic004G112100--Sobic006G153400 Sobic009G048900 Sobic009G048900 Sobic004G112100--Sobic009G048900 Sobic010G104800 Sobic010G104800 Sobic004G112100--Sobic010G104800 Sobic004G112100--Sobic004G215800 Sobic009G256100 Sobic009G256100 Sobic004G112100--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G112100--Sobic003G097600 Sobic004G112100--Sobic002G404800 Sobic007G006400 Sobic007G006400 Sobic004G112100--Sobic007G006400 Sobic004G112100--Sobic004G027600 Sobic007G105500 Sobic007G105500 Sobic002G404800--Sobic007G105500 Sobic002G404800--Sobic003G036200 Sobic002G404800--Sobic004G215800 Sobic002G404800--Sobic005G101200 Sobic002G390100 Sobic002G390100 Sobic002G404800--Sobic002G390100 Sobic002G404800--Sobic009G256100 Sobic002G404800--Sobic003G185900 Sobic008G033000 Sobic008G033000 Sobic002G404800--Sobic008G033000 Sobic002G404800--Sobic004G112100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.