Gene annotation
Transcriptome id Sobic.010G205100.3,Sobic.010G205100.1,Sobic.010G205100.2
Synonym SPS5;SPS;SPS5, ATSPS1F, Sb10g025240, SPS1F
Functional annotation Sucrose phosphate synthase genes (PubMedID : 24456189)
sucrose phosphate synthase (PubMedID : 26616172)
Sugar synthesis (PubMedID : 27330561)
sucrose-phosphate synthase, putative, expressed
UniProt A0A1W0VU05 , A0A194YLJ2 , A0A194YKF6
Pfam PF00862 PF05116 PF00534
Panther DB PTHR12526 PTHR12526:SF406
NCBI CDD KOG0853; Glycosyltransferase
KEGG Orthology K00696; sucrose-phosphate synthase
Gene Ontology GO:0016157; sucrose synthase activity GO:0005985sucrose metabolic process


Orthologs (automatic annotation)
TAIR AT5G20280 : sucrose phosphate synthase 1F
RAP-DB (Rice) LOC_Os06g43630.1 : sucrose-phosphate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a042069 , Zm00025a051399 , Zm00025a030781 , Zm00025a019305
Brachypodium KQK16777 , KQJ95996 , KQJ93705
Barley HORVU7Hr1G115590.8 , HORVU7Hr1G115590.9 , HORVU7Hr1G115590.2 , HORVU7Hr1G115590.3 , HORVU7Hr1G115590.1 , HORVU7Hr1G115590.6 , HORVU7Hr1G115590.7 , HORVU7Hr1G115590.4 , HORVU7Hr1G115590.5 , HORVU3Hr1G002280.1 , HORVU3Hr1G002280.3 , HORVU3Hr1G002280.2 , HORVU3Hr1G002280.5 , HORVU3Hr1G002280.4 , HORVU3Hr1G002280.7 , HORVU3Hr1G002280.6 , HORVU7Hr1G115590.10 , HORVU7Hr1G115590.11 , HORVU7Hr1G115590.12 , HORVU5Hr1G122020.1 , HORVU6Hr1G028330.4 , HORVU6Hr1G028330.5 , HORVU6Hr1G028330.6 , HORVU6Hr1G028330.7 , HORVU6Hr1G028330.1 , HORVU6Hr1G028330.2 , HORVU6Hr1G028330.3 , HORVU6Hr1G028330.8 , HORVU6Hr1G028330.9
Wheat TraesCS7A02G518200 , TraesCS7A02G518200 , TraesCSU02G044500 , TraesCSU02G044500 , TraesCS3D02G013000 , TraesCS3D02G013000 , TraesCS6B02G173000 , TraesCS6B02G173000 , TraesCS6D02G133800 , TraesCS7B02G434300 , TraesCS7B02G434300 , TraesCS7B02G434300 , TraesCS3A02G015500 , TraesCS3A02G015500 , TraesCS7D02G508100 , TraesCS7D02G508100 , TraesCS6A02G144800 , TraesCS6A02G144800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
2 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
3 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
4 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
5 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
6 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
7 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
8 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
9 Sobic.003G332700 Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
10 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
11 Sobic.002G091600 methyltransferase, putative, expressed -
12 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
13 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
14 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
15 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
16 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
17 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
18 Sobic.009G123900 L1P family of ribosomal proteins domain containing protein, expressed K02863: RP-L1, MRPL1, large subunit ribosomal protein L1
19 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
20 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31


Gene co-expression network
sample Sobic010G205100 Sobic010G205100 Sobic006G064100 Sobic006G064100 Sobic010G205100--Sobic006G064100 Sobic010G085100 Sobic010G085100 Sobic010G205100--Sobic010G085100 Sobic001G531500 Sobic001G531500 Sobic010G205100--Sobic001G531500 Sobic001G073900 Sobic001G073900 Sobic010G205100--Sobic001G073900 Sobic009G038900 Sobic009G038900 Sobic010G205100--Sobic009G038900 Sobic003G036200 Sobic003G036200 Sobic010G205100--Sobic003G036200 Sobic005G101200 Sobic005G101200 Sobic010G205100--Sobic005G101200 Sobic002G404800 Sobic002G404800 Sobic010G205100--Sobic002G404800 Sobic003G332700 Sobic003G332700 Sobic010G205100--Sobic003G332700 Sobic006G064100--Sobic010G205100 Sobic006G064100--Sobic001G531500 Sobic002G403600 Sobic002G403600 Sobic006G064100--Sobic002G403600 Sobic006G064100--Sobic001G073900 Sobic006G120500 Sobic006G120500 Sobic006G064100--Sobic006G120500 Sobic004G317500 Sobic004G317500 Sobic006G064100--Sobic004G317500 Sobic001G305600 Sobic001G305600 Sobic006G064100--Sobic001G305600 Sobic006G064100--Sobic003G036200 Sobic006G064100--Sobic010G085100 Sobic010G085100--Sobic005G101200 Sobic003G185900 Sobic003G185900 Sobic010G085100--Sobic003G185900 Sobic007G105500 Sobic007G105500 Sobic010G085100--Sobic007G105500 Sobic010G085100--Sobic002G404800 Sobic004G215800 Sobic004G215800 Sobic010G085100--Sobic004G215800 Sobic008G140200 Sobic008G140200 Sobic010G085100--Sobic008G140200 Sobic010G085100--Sobic003G036200 Sobic008G033000 Sobic008G033000 Sobic010G085100--Sobic008G033000 Sobic004G154200 Sobic004G154200 Sobic010G085100--Sobic004G154200 Sobic002G118200 Sobic002G118200 Sobic001G531500--Sobic002G118200 Sobic001G531500--Sobic006G064100 Sobic001G531500--Sobic002G403600 Sobic001G531500--Sobic001G073900 Sobic001G531500--Sobic010G205100 Sobic009G123900 Sobic009G123900 Sobic001G531500--Sobic009G123900 Sobic005G001700 Sobic005G001700 Sobic001G531500--Sobic005G001700 Sobic008G001900 Sobic008G001900 Sobic001G531500--Sobic008G001900 Sobic001G531500--Sobic003G332700 Sobic001G073900--Sobic003G332700 Sobic001G073900--Sobic008G001900 Sobic008G117000 Sobic008G117000 Sobic001G073900--Sobic008G117000 Sobic003G342100 Sobic003G342100 Sobic001G073900--Sobic003G342100 Sobic001G065600 Sobic001G065600 Sobic001G073900--Sobic001G065600 Sobic001G073900--Sobic001G531500 Sobic001G073900--Sobic005G001700 Sobic004G235600 Sobic004G235600 Sobic001G073900--Sobic004G235600 Sobic002G049600 Sobic002G049600 Sobic001G073900--Sobic002G049600 Sobic004G281800 Sobic004G281800 Sobic009G038900--Sobic004G281800 Sobic009G038900--Sobic005G101200 Sobic005G106600 Sobic005G106600 Sobic009G038900--Sobic005G106600 Sobic005G068700 Sobic005G068700 Sobic009G038900--Sobic005G068700 Sobic004G042200 Sobic004G042200 Sobic009G038900--Sobic004G042200 Sobic003G220100 Sobic003G220100 Sobic009G038900--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic009G038900--Sobic010G085100 Sobic003G036200--Sobic007G105500 Sobic003G036200--Sobic004G215800 Sobic002G390100 Sobic002G390100 Sobic003G036200--Sobic002G390100 Sobic003G036200--Sobic002G404800 Sobic003G036200--Sobic003G185900 Sobic003G036200--Sobic005G101200 Sobic003G036200--Sobic010G085100 Sobic009G256100 Sobic009G256100 Sobic003G036200--Sobic009G256100 Sobic008G033200 Sobic008G033200 Sobic003G036200--Sobic008G033200 Sobic004G189800 Sobic004G189800 Sobic005G101200--Sobic004G189800 Sobic005G101200--Sobic005G068700 Sobic005G101200--Sobic002G404800 Sobic001G258200 Sobic001G258200 Sobic005G101200--Sobic001G258200 Sobic005G101200--Sobic009G038900 Sobic005G101200--Sobic007G105500 Sobic005G101200--Sobic003G185900 Sobic005G101200--Sobic010G085100 Sobic005G101200--Sobic004G281800 Sobic002G404800--Sobic007G105500 Sobic002G404800--Sobic003G036200 Sobic002G404800--Sobic004G215800 Sobic002G404800--Sobic005G101200 Sobic002G404800--Sobic002G390100 Sobic002G404800--Sobic009G256100 Sobic002G404800--Sobic003G185900 Sobic002G404800--Sobic008G033000 Sobic004G112100 Sobic004G112100 Sobic002G404800--Sobic004G112100 Sobic003G332700--Sobic001G073900 Sobic003G332700--Sobic008G001900 Sobic003G332700--Sobic008G117000 Sobic001G530900 Sobic001G530900 Sobic003G332700--Sobic001G530900 Sobic003G332700--Sobic004G235600 Sobic003G332700--Sobic001G531500 Sobic003G442700 Sobic003G442700 Sobic003G332700--Sobic003G442700 Sobic003G332700--Sobic010G085100 Sobic005G118400 Sobic005G118400 Sobic003G332700--Sobic005G118400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.