Gene annotation
| Transcriptome id | Sobic.004G270600.1,Sobic.004G270600.2 |
|---|---|
| Synonym | Sb04g030830 |
| Functional annotation | MYB family transcription factor, putative, expressed |
| UniProt | C5Y0E3 , A0A1Z5RP69 |
| Pfam | PF14379 PF00249 PF14379 |
| Panther DB | PTHR31499 PTHR31499:SF5 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G45580 : Homeodomain-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g47190.1 : MYB family transcription factor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a032456 , Zm00025a021668 |
| Brachypodium | KQK00892 , KQK00891 |
| Barley | HORVU6Hr1G068100.9 , HORVU6Hr1G068100.8 , HORVU6Hr1G068100.7 , HORVU6Hr1G068100.6 , HORVU6Hr1G068100.5 , HORVU6Hr1G068100.4 , HORVU6Hr1G068100.3 , HORVU6Hr1G068100.2 , HORVU6Hr1G068140.1 |
| Wheat | TraesCS6B02G296300 , TraesCS6D02G245900 , TraesCS6D02G245900 , TraesCS6A02G269000 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G073900 | lactate/malate dehydrogenase, putative, expressed | K00026: malate dehydrogenase |
| 2 | Sobic.008G117000 | expressed protein | K13457: RPM1, disease resistance protein RPM1 |
| 3 | Sobic.008G047000 | actin, putative, expressed | K10355: actin, other eukaryote |
| 4 | Sobic.001G097100 | -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed | K00600: glyA, glycine hydroxymethyltransferase |
| 5 | Sobic.003G443500 | cyclase/dehydrase family protein, expressed | - |
| 6 | Sobic.002G049600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 7 | Sobic.005G126300 | expressed protein | - |
| 8 | Sobic.008G033200 | stem-specific protein TSJT1, putative, expressed | - |
| 9 | Sobic.001G062900 | peptidase, putative, expressed | K01301: N-acetylated-alpha-linked acidic dipeptidase |
| 10 | Sobic.003G003600 | similar to Nodule inception protein-like(PubMedID : 29862293)@NIN, putative, expressed | - |
| 11 | Sobic.010G067100 | glutathione peroxidase, putative, expressed | K00432: gpx, btuE, glutathione peroxidase |
| 12 | Sobic.002G324500 | PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed | K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase |
| 13 | Sobic.003G342100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed | - |
| 14 | Sobic.001G261408 | - | - |
| 15 | Sobic.010G085100 | geminivirus Rep-interacting motor protein, putative, expressed | - |
| 16 | Sobic.005G188600 | - | - |
| 17 | Sobic.010G205100 | Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed | K00696: sucrose-phosphate synthase |
| 18 | Sobic.002G403600 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed | - |
| 19 | Sobic.003G036200 | NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 20 | Sobic.001G134100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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