Gene annotation
Transcriptome id Sobic.003G190000.1
Synonym Sb03g025430
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C6JST3 , C6JSQ2 , C5XNM5
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF367
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G10910 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g37870.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a028754
Brachypodium PNT72205 , PNT72204 , PNT72206 , PNT72201 , PNT72203 , PNT72202 , KQK08337 , KQK08336 , KQK08335 , KQK08334 , KQK08332 , KQK08333
Barley -
Wheat TraesCS3B02G233200 , TraesCS3B02G233200 , TraesCS3B02G233200 , TraesCS3B02G233200 , TraesCS3B02G233200 , TraesCS3A02G204300 , TraesCS3A02G204300 , TraesCS3D02G207500 , TraesCS3D02G207500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G060500 YT521-B, putative, expressed -
2 Sobic.002G073200 peptidase, M24 family protein, putative, expressed K01262: Xaa-Pro aminopeptidase
3 Sobic.002G173100 Leucine Rich Repeat family protein, expressed -
4 Sobic.010G197000 M16 domain containing zinc peptidase, putative, expressed -
5 Sobic.003G203300 stress regulated protein, putative, expressed -
6 Sobic.009G014100 OsFBX178 - F-box domain containing protein, expressed -
7 Sobic.005G075100 rp3 protein, putative, expressed -
8 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
9 Sobic.001G219700 pentatricopeptide, putative, expressed -
10 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
11 Sobic.010G110400 - -
12 Sobic.006G030400 xa21, putative, expressed -
13 Sobic.003G108900 -(PubMedID : 26465154)@peptidase, putative, expressed -
14 Sobic.002G339300 myosin-Vb, putative, expressed K10357: myosin V
15 Sobic.004G252500 OsProtIV1 - Putative Protease IV homologue@ Domain 2 is a SPH, expressed K04773: protease IV
16 Sobic.003G125900 DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed K02470: DNA gyrase subunit B
17 Sobic.002G418600 expressed protein K15710: E3 ubiquitin-protein ligase SHPRH
18 Sobic.004G026500 expressed protein -
19 Sobic.004G179400 ferrochelatase 2(PubMedID : 26465154)@ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
20 Sobic.008G172300 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2


Gene co-expression network
sample Sobic003G190000 Sobic003G190000 Sobic001G060500 Sobic001G060500 Sobic003G190000--Sobic001G060500 Sobic002G073200 Sobic002G073200 Sobic003G190000--Sobic002G073200 Sobic002G173100 Sobic002G173100 Sobic003G190000--Sobic002G173100 Sobic010G197000 Sobic010G197000 Sobic003G190000--Sobic010G197000 Sobic003G203300 Sobic003G203300 Sobic003G190000--Sobic003G203300 Sobic009G014100 Sobic009G014100 Sobic003G190000--Sobic009G014100 Sobic005G075100 Sobic005G075100 Sobic003G190000--Sobic005G075100 Sobic005G142800 Sobic005G142800 Sobic003G190000--Sobic005G142800 Sobic001G219700 Sobic001G219700 Sobic003G190000--Sobic001G219700 Sobic006G233700 Sobic006G233700 Sobic001G060500--Sobic006G233700 Sobic004G179400 Sobic004G179400 Sobic001G060500--Sobic004G179400 Sobic001G060500--Sobic002G073200 Sobic001G060500--Sobic003G190000 Sobic001G060500--Sobic003G203300 Sobic001G060500--Sobic002G173100 Sobic010G110400 Sobic010G110400 Sobic001G060500--Sobic010G110400 Sobic003G125900 Sobic003G125900 Sobic001G060500--Sobic003G125900 Sobic003G108900 Sobic003G108900 Sobic001G060500--Sobic003G108900 Sobic002G073200--Sobic009G014100 Sobic002G073200--Sobic001G060500 Sobic002G073200--Sobic003G190000 Sobic002G418600 Sobic002G418600 Sobic002G073200--Sobic002G418600 Sobic002G073200--Sobic003G203300 Sobic002G073200--Sobic010G110400 Sobic002G073200--Sobic003G108900 Sobic001G500600 Sobic001G500600 Sobic002G073200--Sobic001G500600 Sobic002G073200--Sobic006G233700 Sobic003G190100 Sobic003G190100 Sobic002G173100--Sobic003G190100 Sobic002G173100--Sobic003G108900 Sobic002G173100--Sobic003G203300 Sobic002G173100--Sobic001G060500 Sobic002G173100--Sobic003G190000 Sobic002G173100--Sobic005G075100 Sobic004G271600 Sobic004G271600 Sobic002G173100--Sobic004G271600 Sobic005G179300 Sobic005G179300 Sobic002G173100--Sobic005G179300 Sobic004G300000 Sobic004G300000 Sobic002G173100--Sobic004G300000 Sobic010G197000--Sobic009G014100 Sobic002G354600 Sobic002G354600 Sobic010G197000--Sobic002G354600 Sobic005G138600 Sobic005G138600 Sobic010G197000--Sobic005G138600 Sobic010G197000--Sobic004G300000 Sobic010G109600 Sobic010G109600 Sobic010G197000--Sobic010G109600 Sobic010G197000--Sobic003G190000 Sobic002G331800 Sobic002G331800 Sobic010G197000--Sobic002G331800 Sobic006G214700 Sobic006G214700 Sobic010G197000--Sobic006G214700 Sobic008G172300 Sobic008G172300 Sobic010G197000--Sobic008G172300 Sobic006G232600 Sobic006G232600 Sobic003G203300--Sobic006G232600 Sobic008G074000 Sobic008G074000 Sobic003G203300--Sobic008G074000 Sobic001G378100 Sobic001G378100 Sobic003G203300--Sobic001G378100 Sobic009G093100 Sobic009G093100 Sobic003G203300--Sobic009G093100 Sobic009G170200 Sobic009G170200 Sobic003G203300--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic003G203300--Sobic001G504400 Sobic002G081400 Sobic002G081400 Sobic003G203300--Sobic002G081400 Sobic003G203300--Sobic006G233700 Sobic004G207400 Sobic004G207400 Sobic003G203300--Sobic004G207400 Sobic009G014100--Sobic010G197000 Sobic009G014100--Sobic008G172300 Sobic009G014100--Sobic002G073200 Sobic009G014100--Sobic003G108900 Sobic004G026500 Sobic004G026500 Sobic009G014100--Sobic004G026500 Sobic009G014100--Sobic002G354600 Sobic004G333400 Sobic004G333400 Sobic009G014100--Sobic004G333400 Sobic009G014100--Sobic003G190000 Sobic002G168300 Sobic002G168300 Sobic009G014100--Sobic002G168300 Sobic002G115050 Sobic002G115050 Sobic005G075100--Sobic002G115050 Sobic004G181600 Sobic004G181600 Sobic005G075100--Sobic004G181600 Sobic005G075100--Sobic002G173100 Sobic002G345700 Sobic002G345700 Sobic005G075100--Sobic002G345700 Sobic005G075100--Sobic003G190000 Sobic010G141966 Sobic010G141966 Sobic005G075100--Sobic010G141966 Sobic006G133900 Sobic006G133900 Sobic005G075100--Sobic006G133900 Sobic006G219600 Sobic006G219600 Sobic005G075100--Sobic006G219600 Sobic009G097200 Sobic009G097200 Sobic005G075100--Sobic009G097200 Sobic006G119400 Sobic006G119400 Sobic005G142800--Sobic006G119400 Sobic001G298900 Sobic001G298900 Sobic005G142800--Sobic001G298900 Sobic001G124100 Sobic001G124100 Sobic005G142800--Sobic001G124100 Sobic004G134200 Sobic004G134200 Sobic005G142800--Sobic004G134200 Sobic005G142800--Sobic008G172300 Sobic005G142800--Sobic002G345700 Sobic005G142800--Sobic002G418600 Sobic010G079500 Sobic010G079500 Sobic005G142800--Sobic010G079500 Sobic007G111400 Sobic007G111400 Sobic005G142800--Sobic007G111400 Sobic001G219700--Sobic006G233700 Sobic001G219700--Sobic004G026500 Sobic001G219700--Sobic001G124100 Sobic001G219700--Sobic003G203300 Sobic008G081900 Sobic008G081900 Sobic001G219700--Sobic008G081900 Sobic002G129400 Sobic002G129400 Sobic001G219700--Sobic002G129400 Sobic005G084500 Sobic005G084500 Sobic001G219700--Sobic005G084500 Sobic009G241200 Sobic009G241200 Sobic001G219700--Sobic009G241200 Sobic002G349100 Sobic002G349100 Sobic001G219700--Sobic002G349100
Octagon: transcription factors


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