Gene annotation
Transcriptome id Sobic.003G230500.1,Sobic.003G230500.2,Sobic.003G230500.3
Synonym Sb03g028850, APL2
Functional annotation "Sh2(Ortholog in maize:Jiang et al., 2013a)" (PubMedID : 31659869)
glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
UniProt B3TU29 , B3TU17 , B3TU16 , B3TTS7 , B3TU72 , B3TU47 , A5Y3Z3 , B3TTQ9 , B3TU89 , B3TTS8 , B3TU67 , A5Y406 , B3TU15 , B3TU74 , B3TTX2 , B3TU78 , A5Y401 , B3TU51 , Q7DM78 , B3TTW5 , B3TTS5 , B3TU70 , B3TU63 , B3TTW8 , B3TTX3 , B3TTW7 , B3TUI7 , B3TU10 , B3TTV3 , B3TUI0 , B3TUF7 , B3TU98 , B3TU94 , B3TTQ0 , O48877 , A5Y3Z1 , B3TTT7 , B3TU26 , B3TTU3 , B3TTQ4 , A5Y3Y6
Pfam PF00483
Panther DB PTHR22572 PTHR22572:SF110
NCBI CDD KOG1322; GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase
KEGG Orthology K00975; glucose-1-phosphate adenylyltransferase
Gene Ontology GO:0016779; nucleotidyltransferase activity GO:0009058biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G27680 : ADPGLC-PPase large subunit
RAP-DB (Rice) LOC_Os01g44220.5,LOC_Os01g44220.1 : glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a028313
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G230500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G001500 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
2 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
3 Sobic.009G021300 Jacalin-like lectin domain containing protein, putative, expressed -
4 Sobic.003G227800 cytochrome P450 72A1, putative, expressed -
5 Sobic.002G408700 OsFBX259 - F-box domain containing protein, expressed -
6 Sobic.010G102900 protein of unknown function DUF1675 domain containing protein, expressed -
7 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
8 Sobic.001G142600 OsFBX103 - F-box domain containing protein, expressed -
9 Sobic.008G071900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
10 Sobic.007G122932 - -
11 Sobic.010G181900 expressed protein -
12 Sobic.003G063900 - -
13 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
14 Sobic.005G056300 no apical meristem protein, putative, expressed -
15 Sobic.008G168400 GRAS family transcription factor domain containing protein, expressed K14494: DELLA protein
16 Sobic.005G079300 terpene synthase, putative, expressed -
17 Sobic.001G129900 indole-3-acetate beta-glucosyltransferase, putative, expressed K13692: UDP-glucose:(indol-3-yl)acetate beta-D-glucosyltransferase
18 Sobic.008G001700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
19 Sobic.002G381600 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
20 Sobic.002G166800 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G230500 Sobic003G230500 Sobic005G001500 Sobic005G001500 Sobic003G230500--Sobic005G001500 Sobic003G307600 Sobic003G307600 Sobic003G230500--Sobic003G307600 Sobic009G021300 Sobic009G021300 Sobic003G230500--Sobic009G021300 Sobic003G227800 Sobic003G227800 Sobic003G230500--Sobic003G227800 Sobic002G408700 Sobic002G408700 Sobic003G230500--Sobic002G408700 Sobic010G102900 Sobic010G102900 Sobic003G230500--Sobic010G102900 Sobic005G089101 Sobic005G089101 Sobic003G230500--Sobic005G089101 Sobic001G142600 Sobic001G142600 Sobic003G230500--Sobic001G142600 Sobic008G071900 Sobic008G071900 Sobic003G230500--Sobic008G071900 Sobic005G001500--Sobic009G021300 Sobic005G001500--Sobic002G408700 Sobic005G001500--Sobic003G227800 Sobic005G001500--Sobic010G102900 Sobic005G001500--Sobic001G142600 Sobic005G001500--Sobic003G307600 Sobic005G001500--Sobic008G071900 Sobic003G063900 Sobic003G063900 Sobic005G001500--Sobic003G063900 Sobic007G122932 Sobic007G122932 Sobic005G001500--Sobic007G122932 Sobic010G181900 Sobic010G181900 Sobic003G307600--Sobic010G181900 Sobic003G307600--Sobic005G001500 Sobic003G307600--Sobic005G089101 Sobic002G100000 Sobic002G100000 Sobic003G307600--Sobic002G100000 Sobic003G307600--Sobic003G227800 Sobic003G307600--Sobic003G063900 Sobic003G307600--Sobic002G408700 Sobic008G168400 Sobic008G168400 Sobic003G307600--Sobic008G168400 Sobic003G307600--Sobic009G021300 Sobic009G021300--Sobic005G001500 Sobic009G021300--Sobic007G122932 Sobic009G021300--Sobic002G408700 Sobic009G021300--Sobic010G102900 Sobic008G001700 Sobic008G001700 Sobic009G021300--Sobic008G001700 Sobic009G021300--Sobic008G071900 Sobic007G147300 Sobic007G147300 Sobic009G021300--Sobic007G147300 Sobic007G123000 Sobic007G123000 Sobic009G021300--Sobic007G123000 Sobic009G021300--Sobic003G227800 Sobic005G056300 Sobic005G056300 Sobic003G227800--Sobic005G056300 Sobic003G227800--Sobic010G102900 Sobic003G227800--Sobic001G142600 Sobic003G227800--Sobic003G063900 Sobic005G079300 Sobic005G079300 Sobic003G227800--Sobic005G079300 Sobic003G135000 Sobic003G135000 Sobic003G227800--Sobic003G135000 Sobic003G227800--Sobic008G071900 Sobic006G080500 Sobic006G080500 Sobic003G227800--Sobic006G080500 Sobic003G227800--Sobic005G001500 Sobic002G408700--Sobic005G001500 Sobic010G209300 Sobic010G209300 Sobic002G408700--Sobic010G209300 Sobic002G408700--Sobic009G021300 Sobic002G408700--Sobic001G142600 Sobic002G408700--Sobic007G122932 Sobic002G408700--Sobic010G181900 Sobic002G408700--Sobic010G102900 Sobic003G291100 Sobic003G291100 Sobic002G408700--Sobic003G291100 Sobic002G408700--Sobic003G227800 Sobic010G102900--Sobic008G071900 Sobic010G102900--Sobic003G227800 Sobic010G102900--Sobic001G142600 Sobic010G102900--Sobic005G001500 Sobic010G102900--Sobic009G021300 Sobic004G171500 Sobic004G171500 Sobic010G102900--Sobic004G171500 Sobic010G102900--Sobic008G001700 Sobic010G102900--Sobic005G056300 Sobic010G102900--Sobic003G063900 Sobic005G089101--Sobic002G100000 Sobic003G225800 Sobic003G225800 Sobic005G089101--Sobic003G225800 Sobic005G089101--Sobic010G181900 Sobic005G197000 Sobic005G197000 Sobic005G089101--Sobic005G197000 Sobic002G217000 Sobic002G217000 Sobic005G089101--Sobic002G217000 Sobic005G089101--Sobic003G307600 Sobic005G089101--Sobic005G001500 Sobic007G037200 Sobic007G037200 Sobic005G089101--Sobic007G037200 Sobic004G212350 Sobic004G212350 Sobic005G089101--Sobic004G212350 Sobic001G142600--Sobic003G227800 Sobic001G142600--Sobic010G102900 Sobic006G104800 Sobic006G104800 Sobic001G142600--Sobic006G104800 Sobic001G142600--Sobic003G063900 Sobic001G142600--Sobic008G071900 Sobic001G142600--Sobic005G001500 Sobic002G053100 Sobic002G053100 Sobic001G142600--Sobic002G053100 Sobic001G142600--Sobic002G408700 Sobic001G142600--Sobic005G056300 Sobic008G071900--Sobic010G102900 Sobic008G071900--Sobic004G171500 Sobic008G071900--Sobic008G001700 Sobic008G071900--Sobic003G227800 Sobic001G362900 Sobic001G362900 Sobic008G071900--Sobic001G362900 Sobic008G071900--Sobic001G142600 Sobic008G071900--Sobic009G021300 Sobic004G085100 Sobic004G085100 Sobic008G071900--Sobic004G085100 Sobic008G071900--Sobic005G001500
Octagon: transcription factors


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