Gene annotation
Transcriptome id Sobic.003G307600.2
Synonym Sb03g035610
Functional annotation MATE efflux family protein, putative, expressed
UniProt A0A1W0VZQ6
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF181
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT1G47530 : MATE efflux family protein
RAP-DB (Rice) LOC_Os01g56050.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048145 , Zm00025a039938 , Zm00025a007368
Brachypodium KQK09915 , KQK09916 , KQK09917 , KQK09918 , KQK23215 , KQK14108 , KQK16109 , PNT74408
Barley HORVU3Hr1G014320.8 , HORVU3Hr1G014320.5 , HORVU3Hr1G014320.7 , HORVU3Hr1G014320.6 , HORVU3Hr1G014320.1 , HORVU3Hr1G014320.3 , HORVU3Hr1G014320.2 , HORVU4Hr1G011690.4 , HORVU4Hr1G011690.7 , HORVU4Hr1G011690.1 , HORVU4Hr1G011690.3 , HORVU4Hr1G011690.2 , HORVU3Hr1G074290.9 , HORVU3Hr1G074290.8 , HORVU3Hr1G074290.13 , HORVU3Hr1G074290.12 , HORVU3Hr1G074290.11 , HORVU3Hr1G074290.10 , HORVU3Hr1G074290.17 , HORVU3Hr1G074290.16 , HORVU3Hr1G074290.15 , HORVU3Hr1G074290.14 , HORVU3Hr1G074290.3 , HORVU3Hr1G074290.2 , HORVU3Hr1G074290.1 , HORVU3Hr1G074290.7 , HORVU3Hr1G074290.6 , HORVU3Hr1G074290.4
Wheat TraesCS4B02G070100 , TraesCS3B02G039300 , TraesCS3A02G044500 , TraesCS7D02G014200 , TraesCS4D02G068800 , TraesCS3A02G044500 , TraesCS3D02G036400 , TraesCS4A02G245300 , TraesCS3B02G336100 , TraesCS3A02G300400 , TraesCS3D02G301400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G181900 expressed protein -
2 Sobic.005G001500 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
3 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
4 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
5 Sobic.003G227800 cytochrome P450 72A1, putative, expressed -
6 Sobic.003G063900 - -
7 Sobic.002G408700 OsFBX259 - F-box domain containing protein, expressed -
8 Sobic.008G168400 GRAS family transcription factor domain containing protein, expressed K14494: DELLA protein
9 Sobic.009G021300 Jacalin-like lectin domain containing protein, putative, expressed -
10 Sobic.005G079300 terpene synthase, putative, expressed -
11 Sobic.003G225800 AAA-type ATPase family protein, putative, expressed -
12 Sobic.004G212350 - -
13 Sobic.010G102900 protein of unknown function DUF1675 domain containing protein, expressed -
14 Sobic.001G142600 OsFBX103 - F-box domain containing protein, expressed -
15 Sobic.002G217000 expressed protein -
16 Sobic.001G129900 indole-3-acetate beta-glucosyltransferase, putative, expressed K13692: UDP-glucose:(indol-3-yl)acetate beta-D-glucosyltransferase
17 Sobic.007G122932 - -
18 Sobic.007G187100 terpene synthase, putative, expressed -
19 Sobic.005G056300 no apical meristem protein, putative, expressed -
20 Sobic.002G381600 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase


Gene co-expression network
sample Sobic003G307600 Sobic003G307600 Sobic010G181900 Sobic010G181900 Sobic003G307600--Sobic010G181900 Sobic005G001500 Sobic005G001500 Sobic003G307600--Sobic005G001500 Sobic005G089101 Sobic005G089101 Sobic003G307600--Sobic005G089101 Sobic002G100000 Sobic002G100000 Sobic003G307600--Sobic002G100000 Sobic003G227800 Sobic003G227800 Sobic003G307600--Sobic003G227800 Sobic003G063900 Sobic003G063900 Sobic003G307600--Sobic003G063900 Sobic002G408700 Sobic002G408700 Sobic003G307600--Sobic002G408700 Sobic008G168400 Sobic008G168400 Sobic003G307600--Sobic008G168400 Sobic009G021300 Sobic009G021300 Sobic003G307600--Sobic009G021300 Sobic010G181900--Sobic008G168400 Sobic010G181900--Sobic002G100000 Sobic010G181900--Sobic005G089101 Sobic010G181900--Sobic003G307600 Sobic010G181900--Sobic003G063900 Sobic005G079300 Sobic005G079300 Sobic010G181900--Sobic005G079300 Sobic007G187100 Sobic007G187100 Sobic010G181900--Sobic007G187100 Sobic004G212350 Sobic004G212350 Sobic010G181900--Sobic004G212350 Sobic002G381600 Sobic002G381600 Sobic010G181900--Sobic002G381600 Sobic005G001500--Sobic009G021300 Sobic005G001500--Sobic002G408700 Sobic005G001500--Sobic003G227800 Sobic010G102900 Sobic010G102900 Sobic005G001500--Sobic010G102900 Sobic001G142600 Sobic001G142600 Sobic005G001500--Sobic001G142600 Sobic005G001500--Sobic003G307600 Sobic008G071900 Sobic008G071900 Sobic005G001500--Sobic008G071900 Sobic005G001500--Sobic003G063900 Sobic007G122932 Sobic007G122932 Sobic005G001500--Sobic007G122932 Sobic005G089101--Sobic002G100000 Sobic003G225800 Sobic003G225800 Sobic005G089101--Sobic003G225800 Sobic005G089101--Sobic010G181900 Sobic005G197000 Sobic005G197000 Sobic005G089101--Sobic005G197000 Sobic002G217000 Sobic002G217000 Sobic005G089101--Sobic002G217000 Sobic005G089101--Sobic003G307600 Sobic005G089101--Sobic005G001500 Sobic007G037200 Sobic007G037200 Sobic005G089101--Sobic007G037200 Sobic005G089101--Sobic004G212350 Sobic002G100000--Sobic005G089101 Sobic002G100000--Sobic004G212350 Sobic002G100000--Sobic007G037200 Sobic002G100000--Sobic010G181900 Sobic005G032500 Sobic005G032500 Sobic002G100000--Sobic005G032500 Sobic002G100000--Sobic002G217000 Sobic002G100000--Sobic008G168400 Sobic004G220900 Sobic004G220900 Sobic002G100000--Sobic004G220900 Sobic002G100000--Sobic007G187100 Sobic005G056300 Sobic005G056300 Sobic003G227800--Sobic005G056300 Sobic003G227800--Sobic010G102900 Sobic003G227800--Sobic001G142600 Sobic003G227800--Sobic003G063900 Sobic003G227800--Sobic005G079300 Sobic003G135000 Sobic003G135000 Sobic003G227800--Sobic003G135000 Sobic003G227800--Sobic008G071900 Sobic006G080500 Sobic006G080500 Sobic003G227800--Sobic006G080500 Sobic003G227800--Sobic005G001500 Sobic003G063900--Sobic008G168400 Sobic003G063900--Sobic003G227800 Sobic003G063900--Sobic005G079300 Sobic001G129900 Sobic001G129900 Sobic003G063900--Sobic001G129900 Sobic003G063900--Sobic002G381600 Sobic003G063900--Sobic006G080500 Sobic003G063900--Sobic005G056300 Sobic003G063900--Sobic001G142600 Sobic009G052400 Sobic009G052400 Sobic003G063900--Sobic009G052400 Sobic002G408700--Sobic005G001500 Sobic010G209300 Sobic010G209300 Sobic002G408700--Sobic010G209300 Sobic002G408700--Sobic009G021300 Sobic002G408700--Sobic001G142600 Sobic002G408700--Sobic007G122932 Sobic002G408700--Sobic010G181900 Sobic002G408700--Sobic010G102900 Sobic003G291100 Sobic003G291100 Sobic002G408700--Sobic003G291100 Sobic002G408700--Sobic003G227800 Sobic008G168400--Sobic001G129900 Sobic008G168400--Sobic002G381600 Sobic008G168400--Sobic005G079300 Sobic008G168400--Sobic006G080500 Sobic008G168400--Sobic009G052400 Sobic008G168400--Sobic003G063900 Sobic005G021100 Sobic005G021100 Sobic008G168400--Sobic005G021100 Sobic008G168400--Sobic007G187100 Sobic001G392900 Sobic001G392900 Sobic008G168400--Sobic001G392900 Sobic009G021300--Sobic005G001500 Sobic009G021300--Sobic007G122932 Sobic009G021300--Sobic002G408700 Sobic009G021300--Sobic010G102900 Sobic008G001700 Sobic008G001700 Sobic009G021300--Sobic008G001700 Sobic009G021300--Sobic008G071900 Sobic007G147300 Sobic007G147300 Sobic009G021300--Sobic007G147300 Sobic007G123000 Sobic007G123000 Sobic009G021300--Sobic007G123000 Sobic009G021300--Sobic003G227800
Octagon: transcription factors


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