Gene annotation
Transcriptome id Sobic.005G001500.1
Synonym SbDof19;DNA binding with one finger transcription factor, SbDof19, SbDof19;DNA binding with One Finger, DNA binding with One Finger, Sb05g000310
Functional annotation Homologous to Dof genes in Arabidopsis and rice. (PubMedID : 21161392)
Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method. (PubMedID : 22476870)
"PBF1(Ortholog in maize:Lang et al., 2014)" (PubMedID : 31659895)
Upregulated in response to drought and salt stress (PubMedID : 27230576)
dof zinc finger domain containing protein, putative, expressed
UniProt C5Y2M8 , E6PBM6
Pfam PF02701
Panther DB PTHR31992 PTHR31992:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G24060 : Dof-type zinc finger DNA-binding family protein
RAP-DB (Rice) LOC_Os07g32510.1 : dof zinc finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a013231 , Zm00025a043793 , Zm00025a026723
Brachypodium PNT73247 , KQK06036
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G001500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G021300 Jacalin-like lectin domain containing protein, putative, expressed -
2 Sobic.002G408700 OsFBX259 - F-box domain containing protein, expressed -
3 Sobic.003G227800 cytochrome P450 72A1, putative, expressed -
4 Sobic.010G102900 protein of unknown function DUF1675 domain containing protein, expressed -
5 Sobic.001G142600 OsFBX103 - F-box domain containing protein, expressed -
6 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
7 Sobic.008G071900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
8 Sobic.003G063900 - -
9 Sobic.007G122932 - -
10 Sobic.010G181900 expressed protein -
11 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
12 Sobic.008G168400 GRAS family transcription factor domain containing protein, expressed K14494: DELLA protein
13 Sobic.005G079300 terpene synthase, putative, expressed -
14 Sobic.005G056300 no apical meristem protein, putative, expressed -
15 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
16 Sobic.008G001700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
17 Sobic.010G209300 expressed protein -
18 Sobic.002G166800 RNA recognition motif containing protein, putative, expressed -
19 Sobic.002G053100 RNA recognition motif containing protein, expressed -
20 Sobic.007G147300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic005G001500 Sobic005G001500 Sobic009G021300 Sobic009G021300 Sobic005G001500--Sobic009G021300 Sobic002G408700 Sobic002G408700 Sobic005G001500--Sobic002G408700 Sobic003G227800 Sobic003G227800 Sobic005G001500--Sobic003G227800 Sobic010G102900 Sobic010G102900 Sobic005G001500--Sobic010G102900 Sobic001G142600 Sobic001G142600 Sobic005G001500--Sobic001G142600 Sobic003G307600 Sobic003G307600 Sobic005G001500--Sobic003G307600 Sobic008G071900 Sobic008G071900 Sobic005G001500--Sobic008G071900 Sobic003G063900 Sobic003G063900 Sobic005G001500--Sobic003G063900 Sobic007G122932 Sobic007G122932 Sobic005G001500--Sobic007G122932 Sobic009G021300--Sobic005G001500 Sobic009G021300--Sobic007G122932 Sobic009G021300--Sobic002G408700 Sobic009G021300--Sobic010G102900 Sobic008G001700 Sobic008G001700 Sobic009G021300--Sobic008G001700 Sobic009G021300--Sobic008G071900 Sobic007G147300 Sobic007G147300 Sobic009G021300--Sobic007G147300 Sobic007G123000 Sobic007G123000 Sobic009G021300--Sobic007G123000 Sobic009G021300--Sobic003G227800 Sobic002G408700--Sobic005G001500 Sobic010G209300 Sobic010G209300 Sobic002G408700--Sobic010G209300 Sobic002G408700--Sobic009G021300 Sobic002G408700--Sobic001G142600 Sobic002G408700--Sobic007G122932 Sobic010G181900 Sobic010G181900 Sobic002G408700--Sobic010G181900 Sobic002G408700--Sobic010G102900 Sobic003G291100 Sobic003G291100 Sobic002G408700--Sobic003G291100 Sobic002G408700--Sobic003G227800 Sobic005G056300 Sobic005G056300 Sobic003G227800--Sobic005G056300 Sobic003G227800--Sobic010G102900 Sobic003G227800--Sobic001G142600 Sobic003G227800--Sobic003G063900 Sobic005G079300 Sobic005G079300 Sobic003G227800--Sobic005G079300 Sobic003G135000 Sobic003G135000 Sobic003G227800--Sobic003G135000 Sobic003G227800--Sobic008G071900 Sobic006G080500 Sobic006G080500 Sobic003G227800--Sobic006G080500 Sobic003G227800--Sobic005G001500 Sobic010G102900--Sobic008G071900 Sobic010G102900--Sobic003G227800 Sobic010G102900--Sobic001G142600 Sobic010G102900--Sobic005G001500 Sobic010G102900--Sobic009G021300 Sobic004G171500 Sobic004G171500 Sobic010G102900--Sobic004G171500 Sobic010G102900--Sobic008G001700 Sobic010G102900--Sobic005G056300 Sobic010G102900--Sobic003G063900 Sobic001G142600--Sobic003G227800 Sobic001G142600--Sobic010G102900 Sobic006G104800 Sobic006G104800 Sobic001G142600--Sobic006G104800 Sobic001G142600--Sobic003G063900 Sobic001G142600--Sobic008G071900 Sobic001G142600--Sobic005G001500 Sobic002G053100 Sobic002G053100 Sobic001G142600--Sobic002G053100 Sobic001G142600--Sobic002G408700 Sobic001G142600--Sobic005G056300 Sobic003G307600--Sobic010G181900 Sobic003G307600--Sobic005G001500 Sobic005G089101 Sobic005G089101 Sobic003G307600--Sobic005G089101 Sobic002G100000 Sobic002G100000 Sobic003G307600--Sobic002G100000 Sobic003G307600--Sobic003G227800 Sobic003G307600--Sobic003G063900 Sobic003G307600--Sobic002G408700 Sobic008G168400 Sobic008G168400 Sobic003G307600--Sobic008G168400 Sobic003G307600--Sobic009G021300 Sobic008G071900--Sobic010G102900 Sobic008G071900--Sobic004G171500 Sobic008G071900--Sobic008G001700 Sobic008G071900--Sobic003G227800 Sobic001G362900 Sobic001G362900 Sobic008G071900--Sobic001G362900 Sobic008G071900--Sobic001G142600 Sobic008G071900--Sobic009G021300 Sobic004G085100 Sobic004G085100 Sobic008G071900--Sobic004G085100 Sobic008G071900--Sobic005G001500 Sobic003G063900--Sobic008G168400 Sobic003G063900--Sobic003G227800 Sobic003G063900--Sobic005G079300 Sobic001G129900 Sobic001G129900 Sobic003G063900--Sobic001G129900 Sobic002G381600 Sobic002G381600 Sobic003G063900--Sobic002G381600 Sobic003G063900--Sobic006G080500 Sobic003G063900--Sobic005G056300 Sobic003G063900--Sobic001G142600 Sobic009G052400 Sobic009G052400 Sobic003G063900--Sobic009G052400 Sobic007G122932--Sobic009G021300 Sobic007G122932--Sobic007G147300 Sobic007G122932--Sobic007G123000 Sobic007G122932--Sobic005G001500 Sobic007G122932--Sobic002G408700 Sobic007G122932--Sobic010G209300 Sobic009G013200 Sobic009G013200 Sobic007G122932--Sobic009G013200 Sobic007G122932--Sobic003G307600 Sobic007G122932--Sobic008G001700
Octagon: transcription factors


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