Gene annotation
Transcriptome id Sobic.002G166800.1
Synonym Sb02g021070, CID8
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5X950
Pfam PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G53650 : CTC-interacting domain 8
RAP-DB (Rice) LOC_Os08g02330.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a046441
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G166800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G032500 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
2 Sobic.006G031000 MYB family transcription factor, putative, expressed -
3 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
4 Sobic.002G101200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
5 Sobic.002G217000 expressed protein -
6 Sobic.007G037200 expressed protein -
7 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
8 Sobic.010G181900 expressed protein -
9 Sobic.001G392900 - -
10 Sobic.003G063900 - -
11 Sobic.008G168400 GRAS family transcription factor domain containing protein, expressed K14494: DELLA protein
12 Sobic.005G001500 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
13 Sobic.002G408700 OsFBX259 - F-box domain containing protein, expressed -
14 Sobic.002G053100 RNA recognition motif containing protein, expressed -
15 Sobic.005G021100 - -
16 Sobic.001G142600 OsFBX103 - F-box domain containing protein, expressed -
17 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
18 Sobic.002G089500 DEF8 - Defensin and Defensin-like DEFL family, expressed -
19 Sobic.004G212350 - -
20 Sobic.010G209300 expressed protein -


Gene co-expression network
sample Sobic002G166800 Sobic002G166800 Sobic005G032500 Sobic005G032500 Sobic002G166800--Sobic005G032500 Sobic006G031000 Sobic006G031000 Sobic002G166800--Sobic006G031000 Sobic002G100000 Sobic002G100000 Sobic002G166800--Sobic002G100000 Sobic002G101200 Sobic002G101200 Sobic002G166800--Sobic002G101200 Sobic002G217000 Sobic002G217000 Sobic002G166800--Sobic002G217000 Sobic007G037200 Sobic007G037200 Sobic002G166800--Sobic007G037200 Sobic005G089101 Sobic005G089101 Sobic002G166800--Sobic005G089101 Sobic010G181900 Sobic010G181900 Sobic002G166800--Sobic010G181900 Sobic001G392900 Sobic001G392900 Sobic002G166800--Sobic001G392900 Sobic005G032500--Sobic007G037200 Sobic005G032500--Sobic002G100000 Sobic008G031400 Sobic008G031400 Sobic005G032500--Sobic008G031400 Sobic002G058900 Sobic002G058900 Sobic005G032500--Sobic002G058900 Sobic008G159300 Sobic008G159300 Sobic005G032500--Sobic008G159300 Sobic005G032500--Sobic002G217000 Sobic004G220900 Sobic004G220900 Sobic005G032500--Sobic004G220900 Sobic005G032500--Sobic002G101200 Sobic004G212350 Sobic004G212350 Sobic005G032500--Sobic004G212350 Sobic006G031000--Sobic002G166800 Sobic010G010300 Sobic010G010300 Sobic006G031000--Sobic010G010300 Sobic006G117300 Sobic006G117300 Sobic006G031000--Sobic006G117300 Sobic006G031000--Sobic002G101200 Sobic002G267700 Sobic002G267700 Sobic006G031000--Sobic002G267700 Sobic009G139500 Sobic009G139500 Sobic006G031000--Sobic009G139500 Sobic006G031000--Sobic005G032500 Sobic006G031000--Sobic001G392900 Sobic002G053100 Sobic002G053100 Sobic006G031000--Sobic002G053100 Sobic002G100000--Sobic005G089101 Sobic002G100000--Sobic004G212350 Sobic002G100000--Sobic007G037200 Sobic002G100000--Sobic010G181900 Sobic002G100000--Sobic005G032500 Sobic002G100000--Sobic002G217000 Sobic008G168400 Sobic008G168400 Sobic002G100000--Sobic008G168400 Sobic002G100000--Sobic004G220900 Sobic007G187100 Sobic007G187100 Sobic002G100000--Sobic007G187100 Sobic002G101200--Sobic002G217000 Sobic002G101200--Sobic005G032500 Sobic002G101200--Sobic002G058900 Sobic002G101200--Sobic007G037200 Sobic002G101200--Sobic002G166800 Sobic002G101200--Sobic002G100000 Sobic003G225800 Sobic003G225800 Sobic002G101200--Sobic003G225800 Sobic002G101200--Sobic006G031000 Sobic009G051201 Sobic009G051201 Sobic002G101200--Sobic009G051201 Sobic002G217000--Sobic003G225800 Sobic002G217000--Sobic002G101200 Sobic005G197000 Sobic005G197000 Sobic002G217000--Sobic005G197000 Sobic002G217000--Sobic002G058900 Sobic002G217000--Sobic007G037200 Sobic002G217000--Sobic005G089101 Sobic002G217000--Sobic005G032500 Sobic002G217000--Sobic002G100000 Sobic006G004100 Sobic006G004100 Sobic002G217000--Sobic006G004100 Sobic007G037200--Sobic005G032500 Sobic007G037200--Sobic004G220900 Sobic007G037200--Sobic002G058900 Sobic007G037200--Sobic008G159300 Sobic007G037200--Sobic002G100000 Sobic007G037200--Sobic002G217000 Sobic007G037200--Sobic008G031400 Sobic003G106400 Sobic003G106400 Sobic007G037200--Sobic003G106400 Sobic007G037200--Sobic004G212350 Sobic005G089101--Sobic002G100000 Sobic005G089101--Sobic003G225800 Sobic005G089101--Sobic010G181900 Sobic005G089101--Sobic005G197000 Sobic005G089101--Sobic002G217000 Sobic003G307600 Sobic003G307600 Sobic005G089101--Sobic003G307600 Sobic005G001500 Sobic005G001500 Sobic005G089101--Sobic005G001500 Sobic005G089101--Sobic007G037200 Sobic005G089101--Sobic004G212350 Sobic010G181900--Sobic008G168400 Sobic010G181900--Sobic002G100000 Sobic010G181900--Sobic005G089101 Sobic010G181900--Sobic003G307600 Sobic003G063900 Sobic003G063900 Sobic010G181900--Sobic003G063900 Sobic005G079300 Sobic005G079300 Sobic010G181900--Sobic005G079300 Sobic010G181900--Sobic007G187100 Sobic010G181900--Sobic004G212350 Sobic002G381600 Sobic002G381600 Sobic010G181900--Sobic002G381600 Sobic005G021100 Sobic005G021100 Sobic001G392900--Sobic005G021100 Sobic002G089500 Sobic002G089500 Sobic001G392900--Sobic002G089500 Sobic001G392900--Sobic008G168400 Sobic001G392900--Sobic002G381600 Sobic001G129900 Sobic001G129900 Sobic001G392900--Sobic001G129900 Sobic006G104800 Sobic006G104800 Sobic001G392900--Sobic006G104800 Sobic009G052400 Sobic009G052400 Sobic001G392900--Sobic009G052400 Sobic004G171600 Sobic004G171600 Sobic001G392900--Sobic004G171600 Sobic001G392900--Sobic003G063900
Octagon: transcription factors


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