Gene annotation
Transcriptome id Sobic.002G408700.1
Synonym Sb02g042250
Functional annotation OsFBX259 - F-box domain containing protein, expressed
UniProt A0A1B6QG46
Pfam PF08268 PF00646
Panther DB PTHR32133 PTHR32133:SF157
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G07870 : F-box and associated interaction domains-containing protein
RAP-DB (Rice) LOC_Os07g47160.1 : OsFBX259 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G001500 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
2 Sobic.010G209300 expressed protein -
3 Sobic.009G021300 Jacalin-like lectin domain containing protein, putative, expressed -
4 Sobic.001G142600 OsFBX103 - F-box domain containing protein, expressed -
5 Sobic.007G122932 - -
6 Sobic.010G181900 expressed protein -
7 Sobic.010G102900 protein of unknown function DUF1675 domain containing protein, expressed -
8 Sobic.003G291100 - -
9 Sobic.003G227800 cytochrome P450 72A1, putative, expressed -
10 Sobic.008G071900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
11 Sobic.003G063900 - -
12 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.008G001700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
14 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
15 Sobic.007G147300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
16 Sobic.007G123000 sex determination protein tasselseed-2, putative, expressed -
17 Sobic.002G166800 RNA recognition motif containing protein, putative, expressed -
18 Sobic.002G053100 RNA recognition motif containing protein, expressed -
19 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
20 Sobic.008G168400 GRAS family transcription factor domain containing protein, expressed K14494: DELLA protein


Gene co-expression network
sample Sobic002G408700 Sobic002G408700 Sobic005G001500 Sobic005G001500 Sobic002G408700--Sobic005G001500 Sobic010G209300 Sobic010G209300 Sobic002G408700--Sobic010G209300 Sobic009G021300 Sobic009G021300 Sobic002G408700--Sobic009G021300 Sobic001G142600 Sobic001G142600 Sobic002G408700--Sobic001G142600 Sobic007G122932 Sobic007G122932 Sobic002G408700--Sobic007G122932 Sobic010G181900 Sobic010G181900 Sobic002G408700--Sobic010G181900 Sobic010G102900 Sobic010G102900 Sobic002G408700--Sobic010G102900 Sobic003G291100 Sobic003G291100 Sobic002G408700--Sobic003G291100 Sobic003G227800 Sobic003G227800 Sobic002G408700--Sobic003G227800 Sobic005G001500--Sobic009G021300 Sobic005G001500--Sobic002G408700 Sobic005G001500--Sobic003G227800 Sobic005G001500--Sobic010G102900 Sobic005G001500--Sobic001G142600 Sobic003G307600 Sobic003G307600 Sobic005G001500--Sobic003G307600 Sobic008G071900 Sobic008G071900 Sobic005G001500--Sobic008G071900 Sobic003G063900 Sobic003G063900 Sobic005G001500--Sobic003G063900 Sobic005G001500--Sobic007G122932 Sobic010G209300--Sobic002G408700 Sobic010G209300--Sobic007G122932 Sobic010G209300--Sobic009G021300 Sobic010G209300--Sobic003G291100 Sobic010G209300--Sobic005G001500 Sobic006G271400 Sobic006G271400 Sobic010G209300--Sobic006G271400 Sobic010G209300--Sobic001G142600 Sobic007G147300 Sobic007G147300 Sobic010G209300--Sobic007G147300 Sobic010G058000 Sobic010G058000 Sobic010G209300--Sobic010G058000 Sobic009G021300--Sobic005G001500 Sobic009G021300--Sobic007G122932 Sobic009G021300--Sobic002G408700 Sobic009G021300--Sobic010G102900 Sobic008G001700 Sobic008G001700 Sobic009G021300--Sobic008G001700 Sobic009G021300--Sobic008G071900 Sobic009G021300--Sobic007G147300 Sobic007G123000 Sobic007G123000 Sobic009G021300--Sobic007G123000 Sobic009G021300--Sobic003G227800 Sobic001G142600--Sobic003G227800 Sobic001G142600--Sobic010G102900 Sobic006G104800 Sobic006G104800 Sobic001G142600--Sobic006G104800 Sobic001G142600--Sobic003G063900 Sobic001G142600--Sobic008G071900 Sobic001G142600--Sobic005G001500 Sobic002G053100 Sobic002G053100 Sobic001G142600--Sobic002G053100 Sobic001G142600--Sobic002G408700 Sobic005G056300 Sobic005G056300 Sobic001G142600--Sobic005G056300 Sobic007G122932--Sobic009G021300 Sobic007G122932--Sobic007G147300 Sobic007G122932--Sobic007G123000 Sobic007G122932--Sobic005G001500 Sobic007G122932--Sobic002G408700 Sobic007G122932--Sobic010G209300 Sobic009G013200 Sobic009G013200 Sobic007G122932--Sobic009G013200 Sobic007G122932--Sobic003G307600 Sobic007G122932--Sobic008G001700 Sobic008G168400 Sobic008G168400 Sobic010G181900--Sobic008G168400 Sobic002G100000 Sobic002G100000 Sobic010G181900--Sobic002G100000 Sobic005G089101 Sobic005G089101 Sobic010G181900--Sobic005G089101 Sobic010G181900--Sobic003G307600 Sobic010G181900--Sobic003G063900 Sobic005G079300 Sobic005G079300 Sobic010G181900--Sobic005G079300 Sobic007G187100 Sobic007G187100 Sobic010G181900--Sobic007G187100 Sobic004G212350 Sobic004G212350 Sobic010G181900--Sobic004G212350 Sobic002G381600 Sobic002G381600 Sobic010G181900--Sobic002G381600 Sobic010G102900--Sobic008G071900 Sobic010G102900--Sobic003G227800 Sobic010G102900--Sobic001G142600 Sobic010G102900--Sobic005G001500 Sobic010G102900--Sobic009G021300 Sobic004G171500 Sobic004G171500 Sobic010G102900--Sobic004G171500 Sobic010G102900--Sobic008G001700 Sobic010G102900--Sobic005G056300 Sobic010G102900--Sobic003G063900 Sobic003G291100--Sobic002G408700 Sobic003G291100--Sobic010G209300 Sobic003G291100--Sobic007G122932 Sobic003G291100--Sobic005G001500 Sobic003G291100--Sobic005G089101 Sobic003G225800 Sobic003G225800 Sobic003G291100--Sobic003G225800 Sobic003G291100--Sobic009G021300 Sobic003G291100--Sobic010G181900 Sobic003G291100--Sobic003G307600 Sobic003G227800--Sobic005G056300 Sobic003G227800--Sobic010G102900 Sobic003G227800--Sobic001G142600 Sobic003G227800--Sobic003G063900 Sobic003G227800--Sobic005G079300 Sobic003G135000 Sobic003G135000 Sobic003G227800--Sobic003G135000 Sobic003G227800--Sobic008G071900 Sobic006G080500 Sobic006G080500 Sobic003G227800--Sobic006G080500 Sobic003G227800--Sobic005G001500
Octagon: transcription factors


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