Gene annotation
| Transcriptome id | Sobic.010G102900.1 |
|---|---|
| Synonym | AFP3, Sb10g008970 |
| Functional annotation | protein of unknown function DUF1675 domain containing protein, expressed |
| UniProt | C5Z7X0 |
| Pfam | PF16135 PF16136 PF07897 |
| Panther DB | PTHR31413 PTHR31413:SF5 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0007165; signal transduction |
Orthologs (automatic annotation)
| TAIR | AT3G29575 : ABI five binding protein 3 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g11550.1 : protein of unknown function DUF1675 domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a053068 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.010G102900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G071900 | tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | K08066: NFYC, nuclear transcription factor Y, gamma |
| 2 | Sobic.003G227800 | cytochrome P450 72A1, putative, expressed | - |
| 3 | Sobic.001G142600 | OsFBX103 - F-box domain containing protein, expressed | - |
| 4 | Sobic.005G001500 | Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed | - |
| 5 | Sobic.009G021300 | Jacalin-like lectin domain containing protein, putative, expressed | - |
| 6 | Sobic.004G171500 | basic helix-loop-helix, putative, expressed | - |
| 7 | Sobic.008G001700 | Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed | - |
| 8 | Sobic.005G056300 | no apical meristem protein, putative, expressed | - |
| 9 | Sobic.003G063900 | - | - |
| 10 | Sobic.001G362900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 71D7, putative, expressed | - |
| 11 | Sobic.002G408700 | OsFBX259 - F-box domain containing protein, expressed | - |
| 12 | Sobic.003G135000 | major facilitator superfamily antiporter, putative, expressed | - |
| 13 | Sobic.002G053100 | RNA recognition motif containing protein, expressed | - |
| 14 | Sobic.006G104800 | dnaJ domain containing protein, expressed | - |
| 15 | Sobic.005G079300 | terpene synthase, putative, expressed | - |
| 16 | Sobic.007G034900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 17 | Sobic.006G080500 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
| 18 | Sobic.004G085100 | mitochondrial carrier protein, putative, expressed | - |
| 19 | Sobic.008G168400 | GRAS family transcription factor domain containing protein, expressed | K14494: DELLA protein |
| 20 | Sobic.001G129900 | indole-3-acetate beta-glucosyltransferase, putative, expressed | K13692: UDP-glucose:(indol-3-yl)acetate beta-D-glucosyltransferase |
Gene co-expression network
Octagon: transcription factors
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