Gene annotation
Transcriptome id Sobic.006G080500.1
Synonym RGE1, Sb06g016740, ZOU
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6PKW6
Pfam PF00010
Panther DB PTHR11514 PTHR11514:SF57
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G49770 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os04g35010.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011401
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G080500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G129900 indole-3-acetate beta-glucosyltransferase, putative, expressed K13692: UDP-glucose:(indol-3-yl)acetate beta-D-glucosyltransferase
2 Sobic.009G052400 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
3 Sobic.005G056300 no apical meristem protein, putative, expressed -
4 Sobic.003G135000 major facilitator superfamily antiporter, putative, expressed -
5 Sobic.002G381600 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
6 Sobic.005G079300 terpene synthase, putative, expressed -
7 Sobic.002G078800 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
8 Sobic.008G168400 GRAS family transcription factor domain containing protein, expressed K14494: DELLA protein
9 Sobic.002G192600 no apical meristem protein, putative, expressed -
10 Sobic.006G178400 monocopper oxidase, putative, expressed -
11 Sobic.004G133600 Sugar transporter(PubMedID : 27330561)@"ZmSWEET4c(Ortholog in maize:Sosso et al., 2015(PubMedID : 31659882)@Zhang et al., 2015)"(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
12 Sobic.002G409250 - -
13 Sobic.006G015750 - -
14 Sobic.003G091400 seven in absentia protein family domain containing protein, expressed -
15 Sobic.004G139700 OsSCP7 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
16 Sobic.006G104800 dnaJ domain containing protein, expressed -
17 Sobic.003G063900 - -
18 Sobic.003G227800 cytochrome P450 72A1, putative, expressed -
19 Sobic.009G061900 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
20 Sobic.007G187100 terpene synthase, putative, expressed -


Gene co-expression network
sample Sobic006G080500 Sobic006G080500 Sobic001G129900 Sobic001G129900 Sobic006G080500--Sobic001G129900 Sobic009G052400 Sobic009G052400 Sobic006G080500--Sobic009G052400 Sobic005G056300 Sobic005G056300 Sobic006G080500--Sobic005G056300 Sobic003G135000 Sobic003G135000 Sobic006G080500--Sobic003G135000 Sobic002G381600 Sobic002G381600 Sobic006G080500--Sobic002G381600 Sobic005G079300 Sobic005G079300 Sobic006G080500--Sobic005G079300 Sobic002G078800 Sobic002G078800 Sobic006G080500--Sobic002G078800 Sobic008G168400 Sobic008G168400 Sobic006G080500--Sobic008G168400 Sobic002G192600 Sobic002G192600 Sobic006G080500--Sobic002G192600 Sobic001G129900--Sobic006G080500 Sobic001G129900--Sobic009G052400 Sobic001G129900--Sobic002G381600 Sobic001G129900--Sobic008G168400 Sobic001G129900--Sobic005G079300 Sobic001G129900--Sobic002G192600 Sobic004G133600 Sobic004G133600 Sobic001G129900--Sobic004G133600 Sobic001G129900--Sobic005G056300 Sobic007G187100 Sobic007G187100 Sobic001G129900--Sobic007G187100 Sobic009G052400--Sobic001G129900 Sobic009G052400--Sobic006G080500 Sobic009G052400--Sobic002G381600 Sobic009G052400--Sobic002G192600 Sobic009G052400--Sobic004G133600 Sobic009G052400--Sobic005G079300 Sobic009G052400--Sobic002G078800 Sobic009G052400--Sobic008G168400 Sobic006G178400 Sobic006G178400 Sobic009G052400--Sobic006G178400 Sobic005G056300--Sobic006G080500 Sobic005G056300--Sobic003G135000 Sobic005G056300--Sobic005G079300 Sobic003G227800 Sobic003G227800 Sobic005G056300--Sobic003G227800 Sobic005G056300--Sobic001G129900 Sobic005G056300--Sobic009G052400 Sobic005G056300--Sobic002G381600 Sobic005G056300--Sobic006G178400 Sobic005G056300--Sobic008G168400 Sobic003G135000--Sobic005G056300 Sobic003G135000--Sobic006G080500 Sobic003G135000--Sobic006G178400 Sobic003G135000--Sobic002G078800 Sobic001G158600 Sobic001G158600 Sobic003G135000--Sobic001G158600 Sobic005G193700 Sobic005G193700 Sobic003G135000--Sobic005G193700 Sobic001G253400 Sobic001G253400 Sobic003G135000--Sobic001G253400 Sobic002G409250 Sobic002G409250 Sobic003G135000--Sobic002G409250 Sobic003G091400 Sobic003G091400 Sobic003G135000--Sobic003G091400 Sobic002G381600--Sobic001G129900 Sobic002G381600--Sobic008G168400 Sobic002G381600--Sobic009G052400 Sobic002G381600--Sobic006G080500 Sobic002G381600--Sobic005G079300 Sobic002G381600--Sobic004G133600 Sobic005G021100 Sobic005G021100 Sobic002G381600--Sobic005G021100 Sobic002G381600--Sobic002G192600 Sobic002G381600--Sobic005G056300 Sobic005G079300--Sobic001G129900 Sobic005G079300--Sobic006G080500 Sobic005G079300--Sobic008G168400 Sobic005G079300--Sobic005G056300 Sobic005G079300--Sobic009G052400 Sobic005G079300--Sobic002G381600 Sobic005G079300--Sobic007G187100 Sobic005G079300--Sobic004G133600 Sobic005G079300--Sobic002G192600 Sobic006G015750 Sobic006G015750 Sobic002G078800--Sobic006G015750 Sobic002G078800--Sobic003G091400 Sobic002G078800--Sobic002G409250 Sobic002G078800--Sobic002G192600 Sobic002G078800--Sobic006G080500 Sobic002G078800--Sobic006G178400 Sobic002G078800--Sobic009G052400 Sobic002G078800--Sobic003G135000 Sobic002G078800--Sobic005G193700 Sobic008G168400--Sobic001G129900 Sobic008G168400--Sobic002G381600 Sobic008G168400--Sobic005G079300 Sobic008G168400--Sobic006G080500 Sobic008G168400--Sobic009G052400 Sobic003G063900 Sobic003G063900 Sobic008G168400--Sobic003G063900 Sobic008G168400--Sobic005G021100 Sobic008G168400--Sobic007G187100 Sobic001G392900 Sobic001G392900 Sobic008G168400--Sobic001G392900 Sobic002G192600--Sobic004G133600 Sobic005G186300 Sobic005G186300 Sobic002G192600--Sobic005G186300 Sobic002G192600--Sobic009G052400 Sobic002G192600--Sobic002G078800 Sobic002G192600--Sobic001G129900 Sobic009G061900 Sobic009G061900 Sobic002G192600--Sobic009G061900 Sobic007G205400 Sobic007G205400 Sobic002G192600--Sobic007G205400 Sobic002G192600--Sobic006G080500 Sobic002G192600--Sobic006G015750
Octagon: transcription factors


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