Gene annotation
| Transcriptome id | Sobic.008G001700.1 |
|---|---|
| Synonym | SbDof24;DNA binding with one finger transcription factor, Sb08g000330, SbDof24;DNA binding with One Finger, DNA binding with One Finger, SbDof24 |
| Functional annotation | Homologous to Dof genes in Arabidopsis and rice. (PubMedID : 21161392) Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method. (PubMedID : 22476870) "PBF1(Ortholog in maize:Lang et al., 2014)" (PubMedID : 31659911) Upregulated in response to drought and salt stress (PubMedID : 27230576) dof zinc finger domain containing protein, putative, expressed |
| UniProt | C5YPQ7 , F6KPP6 , E6PBN1 |
| Pfam | PF02701 |
| Panther DB | PTHR31992 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding |
Orthologs (automatic annotation)
| TAIR | AT4G24060 : Dof-type zinc finger DNA-binding family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g32510.1 : dof zinc finger domain containing protein, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.008G001700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G171500 | basic helix-loop-helix, putative, expressed | - |
| 2 | Sobic.008G071900 | tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | K08066: NFYC, nuclear transcription factor Y, gamma |
| 3 | Sobic.001G362900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 71D7, putative, expressed | - |
| 4 | Sobic.004G116200 | expressed protein | - |
| 5 | Sobic.009G021300 | Jacalin-like lectin domain containing protein, putative, expressed | - |
| 6 | Sobic.004G085100 | mitochondrial carrier protein, putative, expressed | - |
| 7 | Sobic.010G102900 | protein of unknown function DUF1675 domain containing protein, expressed | - |
| 8 | Sobic.007G147300 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | K09286: EREBP-like factor |
| 9 | Sobic.002G088000 | cytokinin-N-glucosyltransferase 1, putative, expressed | - |
| 10 | Sobic.009G086800 | no apical meristem protein, putative, expressed | - |
| 11 | Sobic.001G142600 | OsFBX103 - F-box domain containing protein, expressed | - |
| 12 | Sobic.005G001500 | Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed | - |
| 13 | Sobic.007G123000 | sex determination protein tasselseed-2, putative, expressed | - |
| 14 | Sobic.003G227800 | cytochrome P450 72A1, putative, expressed | - |
| 15 | Sobic.002G408700 | OsFBX259 - F-box domain containing protein, expressed | - |
| 16 | Sobic.002G417900 | nucleotidyltransferase, putative, expressed | - |
| 17 | Sobic.007G122932 | - | - |
| 18 | Sobic.002G053100 | RNA recognition motif containing protein, expressed | - |
| 19 | Sobic.005G188000 | no apical meristem protein, putative, expressed | - |
| 20 | Sobic.007G034900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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