Gene annotation
Transcriptome id Sobic.002G417900.4,Sobic.002G417900.3
Synonym
Functional annotation nucleotidyltransferase, putative, expressed
UniProt A0A1W0W822 , A0A1W0W7Y0
Pfam -
Panther DB PTHR23092 PTHR23092:SF29
NCBI CDD KOG1906; DNA polymerase sigma
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G51620 : PAP/OAS1 substrate-binding domain superfamily
RAP-DB (Rice) LOC_Os12g18530.1 : nucleotidyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a002355 , Zm00025a015442 , Zm00025a049155
Brachypodium -
Barley HORVU4Hr1G049990.17 , HORVU4Hr1G049990.16 , HORVU4Hr1G049990.15 , HORVU4Hr1G049990.14 , HORVU4Hr1G049990.13 , HORVU4Hr1G049990.12 , HORVU4Hr1G049990.11 , HORVU4Hr1G049990.10 , HORVU4Hr1G049990.19 , HORVU4Hr1G049990.18 , HORVU4Hr1G049990.24 , HORVU4Hr1G049990.25 , HORVU4Hr1G049990.22 , HORVU4Hr1G049990.23 , HORVU4Hr1G049990.20 , HORVU4Hr1G049990.21 , HORVU4Hr1G049990.9 , HORVU4Hr1G049990.8 , HORVU4Hr1G049990.7 , HORVU4Hr1G049990.6 , HORVU4Hr1G049990.5 , HORVU4Hr1G049990.4 , HORVU4Hr1G049990.3 , HORVU4Hr1G049990.2 , HORVU4Hr1G049990.1
Wheat TraesCS4D02G171200 , TraesCS4B02G168900 , TraesCS4A02G136000 , TraesCS4B02G168900 , TraesCS4B02G168900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G362900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 71D7, putative, expressed -
2 Sobic.004G085100 mitochondrial carrier protein, putative, expressed -
3 Sobic.009G116500 esterase, putative, expressed -
4 Sobic.001G297800 expressed protein -
5 Sobic.003G156100 OsFBX117 - F-box domain containing protein, expressed -
6 Sobic.004G171500 basic helix-loop-helix, putative, expressed -
7 Sobic.002G089400 DEF8 - Defensin and Defensin-like DEFL family, expressed -
8 Sobic.008G176600 expressed protein -
9 Sobic.002G088000 cytokinin-N-glucosyltransferase 1, putative, expressed -
10 Sobic.007G034900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450, putative, expressed -
11 Sobic.002G028100 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.002G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@"BG2(Ortholog in rice:Xu et al., 2015)"(PubMedID : 31659863)@cytochrome P450, putative, expressed -
13 Sobic.001G037800 cinnamoyl CoA reductase, putative, expressed -
14 Sobic.004G261000 expressed protein -
15 Sobic.001G535900 aquaporin protein, putative, expressed K09873: aquaporin TIP
16 Sobic.010G200400 AP2 domain containing protein, expressed -
17 Sobic.008G064000 LTPL36 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.007G205100 AP2 domain containing protein, expressed -
19 Sobic.002G338600 expressed protein -
20 Sobic.008G071900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma


Gene co-expression network
sample Sobic002G417900 Sobic002G417900 Sobic001G362900 Sobic001G362900 Sobic002G417900--Sobic001G362900 Sobic004G085100 Sobic004G085100 Sobic002G417900--Sobic004G085100 Sobic009G116500 Sobic009G116500 Sobic002G417900--Sobic009G116500 Sobic001G297800 Sobic001G297800 Sobic002G417900--Sobic001G297800 Sobic003G156100 Sobic003G156100 Sobic002G417900--Sobic003G156100 Sobic004G171500 Sobic004G171500 Sobic002G417900--Sobic004G171500 Sobic002G089400 Sobic002G089400 Sobic002G417900--Sobic002G089400 Sobic008G176600 Sobic008G176600 Sobic002G417900--Sobic008G176600 Sobic002G088000 Sobic002G088000 Sobic002G417900--Sobic002G088000 Sobic001G362900--Sobic004G085100 Sobic001G362900--Sobic004G171500 Sobic001G362900--Sobic002G088000 Sobic008G001700 Sobic008G001700 Sobic001G362900--Sobic008G001700 Sobic008G071900 Sobic008G071900 Sobic001G362900--Sobic008G071900 Sobic004G116200 Sobic004G116200 Sobic001G362900--Sobic004G116200 Sobic001G362900--Sobic002G417900 Sobic001G362900--Sobic009G116500 Sobic001G362900--Sobic001G297800 Sobic004G085100--Sobic001G362900 Sobic004G085100--Sobic002G088000 Sobic004G085100--Sobic004G171500 Sobic004G085100--Sobic004G116200 Sobic004G085100--Sobic002G417900 Sobic004G085100--Sobic008G001700 Sobic004G085100--Sobic008G071900 Sobic005G188000 Sobic005G188000 Sobic004G085100--Sobic005G188000 Sobic004G085100--Sobic003G156100 Sobic007G034900 Sobic007G034900 Sobic009G116500--Sobic007G034900 Sobic009G116500--Sobic002G089400 Sobic002G338600 Sobic002G338600 Sobic009G116500--Sobic002G338600 Sobic004G261000 Sobic004G261000 Sobic009G116500--Sobic004G261000 Sobic010G200200 Sobic010G200200 Sobic009G116500--Sobic010G200200 Sobic007G205100 Sobic007G205100 Sobic009G116500--Sobic007G205100 Sobic009G116500--Sobic001G297800 Sobic008G081700 Sobic008G081700 Sobic009G116500--Sobic008G081700 Sobic001G259250 Sobic001G259250 Sobic009G116500--Sobic001G259250 Sobic002G367600 Sobic002G367600 Sobic001G297800--Sobic002G367600 Sobic001G535900 Sobic001G535900 Sobic001G297800--Sobic001G535900 Sobic002G028100 Sobic002G028100 Sobic001G297800--Sobic002G028100 Sobic002G211700 Sobic002G211700 Sobic001G297800--Sobic002G211700 Sobic001G297800--Sobic002G089400 Sobic009G001600 Sobic009G001600 Sobic001G297800--Sobic009G001600 Sobic003G247700 Sobic003G247700 Sobic001G297800--Sobic003G247700 Sobic001G297800--Sobic009G116500 Sobic006G018400 Sobic006G018400 Sobic001G297800--Sobic006G018400 Sobic008G064000 Sobic008G064000 Sobic003G156100--Sobic008G064000 Sobic003G156100--Sobic001G297800 Sobic003G156100--Sobic006G018400 Sobic003G156100--Sobic001G535900 Sobic003G156100--Sobic002G211700 Sobic007G083300 Sobic007G083300 Sobic003G156100--Sobic007G083300 Sobic003G156100--Sobic003G247700 Sobic003G156100--Sobic002G367600 Sobic003G156100--Sobic005G188000 Sobic004G171500--Sobic001G362900 Sobic004G171500--Sobic008G071900 Sobic004G171500--Sobic008G001700 Sobic004G171500--Sobic004G085100 Sobic004G171500--Sobic004G116200 Sobic010G102900 Sobic010G102900 Sobic004G171500--Sobic010G102900 Sobic004G171500--Sobic002G088000 Sobic004G171500--Sobic002G417900 Sobic004G171500--Sobic009G116500 Sobic010G200400 Sobic010G200400 Sobic002G089400--Sobic010G200400 Sobic002G089400--Sobic007G205100 Sobic002G089400--Sobic002G028100 Sobic002G089400--Sobic002G338600 Sobic007G025300 Sobic007G025300 Sobic002G089400--Sobic007G025300 Sobic002G089400--Sobic001G297800 Sobic002G089400--Sobic002G367600 Sobic002G089400--Sobic009G116500 Sobic002G089400--Sobic001G535900 Sobic008G176600--Sobic001G297800 Sobic008G176600--Sobic009G116500 Sobic008G176600--Sobic004G085100 Sobic008G176600--Sobic002G417900 Sobic008G176600--Sobic001G362900 Sobic008G176600--Sobic002G028100 Sobic008G176600--Sobic007G034900 Sobic008G176600--Sobic002G089400 Sobic008G176600--Sobic002G367600 Sobic002G088000--Sobic004G085100 Sobic002G088000--Sobic001G362900 Sobic002G088000--Sobic004G116200 Sobic002G088000--Sobic005G188000 Sobic002G088000--Sobic004G171500 Sobic002G088000--Sobic008G001700 Sobic003G350900 Sobic003G350900 Sobic002G088000--Sobic003G350900 Sobic002G088000--Sobic002G417900 Sobic002G088000--Sobic003G156100
Octagon: transcription factors


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