Gene annotation
Transcriptome id Sobic.003G156100.1
Synonym Sb03g013615
Functional annotation OsFBX117 - F-box domain containing protein, expressed
UniProt A0A1B6Q3E2
Pfam PF03478
Panther DB PTHR11102 PTHR11102:SF96
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G55150 : Protein of unknown function (DUF295)
RAP-DB (Rice) LOC_Os04g08510.1 : OsFBX117 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a024468
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G064000 LTPL36 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.001G297800 expressed protein -
3 Sobic.006G018400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
4 Sobic.001G535900 aquaporin protein, putative, expressed K09873: aquaporin TIP
5 Sobic.002G211700 storage protein(PubMedID : 16668596)@"kafirin seed storage protein, delta-kafirin precursor"(PubMedID : 21853065)@PROLM23 - Prolamin precursor, expressed -
6 Sobic.007G083300 paired amphipathic helix repeat-containing protein, putative, expressed -
7 Sobic.003G247700 cold acclimation protein WCOR413, putative, expressed -
8 Sobic.002G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@"BG2(Ortholog in rice:Xu et al., 2015)"(PubMedID : 31659863)@cytochrome P450, putative, expressed -
9 Sobic.005G188000 no apical meristem protein, putative, expressed -
10 Sobic.007G070700 OsFBX265 - F-box domain containing protein, expressed -
11 Sobic.010G034900 expressed protein -
12 Sobic.009G001600 "kafirin seed storage protein, similar to Beta-kafirin precursor"(PubMedID : 21853065)@PROLM24 - Prolamin precursor, expressed -
13 Sobic.002G089400 DEF8 - Defensin and Defensin-like DEFL family, expressed -
14 Sobic.002G077600 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.008G103066 - -
16 Sobic.K043500 MYB family transcription factor, putative, expressed -
17 Sobic.002G417900 nucleotidyltransferase, putative, expressed -
18 Sobic.004G085100 mitochondrial carrier protein, putative, expressed -
19 Sobic.002G028100 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.007G025300 helix-loop-helix DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic003G156100 Sobic003G156100 Sobic008G064000 Sobic008G064000 Sobic003G156100--Sobic008G064000 Sobic001G297800 Sobic001G297800 Sobic003G156100--Sobic001G297800 Sobic006G018400 Sobic006G018400 Sobic003G156100--Sobic006G018400 Sobic001G535900 Sobic001G535900 Sobic003G156100--Sobic001G535900 Sobic002G211700 Sobic002G211700 Sobic003G156100--Sobic002G211700 Sobic007G083300 Sobic007G083300 Sobic003G156100--Sobic007G083300 Sobic003G247700 Sobic003G247700 Sobic003G156100--Sobic003G247700 Sobic002G367600 Sobic002G367600 Sobic003G156100--Sobic002G367600 Sobic005G188000 Sobic005G188000 Sobic003G156100--Sobic005G188000 Sobic010G034900 Sobic010G034900 Sobic008G064000--Sobic010G034900 Sobic008G064000--Sobic007G083300 Sobic008G064000--Sobic003G156100 Sobic007G070700 Sobic007G070700 Sobic008G064000--Sobic007G070700 Sobic008G064000--Sobic003G247700 SobicK043500 SobicK043500 Sobic008G064000--SobicK043500 Sobic008G064000--Sobic002G211700 Sobic008G064000--Sobic001G535900 Sobic008G064000--Sobic005G188000 Sobic001G297800--Sobic002G367600 Sobic001G297800--Sobic001G535900 Sobic002G028100 Sobic002G028100 Sobic001G297800--Sobic002G028100 Sobic001G297800--Sobic002G211700 Sobic002G089400 Sobic002G089400 Sobic001G297800--Sobic002G089400 Sobic009G001600 Sobic009G001600 Sobic001G297800--Sobic009G001600 Sobic001G297800--Sobic003G247700 Sobic009G116500 Sobic009G116500 Sobic001G297800--Sobic009G116500 Sobic001G297800--Sobic006G018400 Sobic006G018400--Sobic001G535900 Sobic006G018400--Sobic002G211700 Sobic006G018400--Sobic002G367600 Sobic006G018400--Sobic009G001600 Sobic006G018400--Sobic001G297800 Sobic006G018400--Sobic003G247700 Sobic008G103066 Sobic008G103066 Sobic006G018400--Sobic008G103066 Sobic006G018400--Sobic002G028100 Sobic002G077600 Sobic002G077600 Sobic006G018400--Sobic002G077600 Sobic001G535900--Sobic002G211700 Sobic001G535900--Sobic009G001600 Sobic001G535900--Sobic002G367600 Sobic001G535900--Sobic003G247700 Sobic001G535900--Sobic001G297800 Sobic001G535900--Sobic002G028100 Sobic001G535900--Sobic008G103066 Sobic009G245750 Sobic009G245750 Sobic001G535900--Sobic009G245750 Sobic001G253501 Sobic001G253501 Sobic001G535900--Sobic001G253501 Sobic002G211700--Sobic001G535900 Sobic002G211700--Sobic009G001600 Sobic002G211700--Sobic003G247700 Sobic002G211700--Sobic002G367600 Sobic002G211700--Sobic009G245750 Sobic002G211700--Sobic001G253501 Sobic002G211700--Sobic007G070700 Sobic002G211700--Sobic002G077600 Sobic002G211700--Sobic001G297800 Sobic007G083300--Sobic007G070700 Sobic007G083300--Sobic002G077600 Sobic007G083300--Sobic003G247700 Sobic007G083300--SobicK043500 Sobic007G083300--Sobic002G211700 Sobic007G083300--Sobic001G253501 Sobic007G083300--Sobic009G245750 Sobic007G083300--Sobic009G001600 Sobic007G083300--Sobic001G535900 Sobic003G247700--Sobic002G211700 Sobic003G247700--Sobic009G001600 Sobic003G247700--Sobic001G535900 Sobic003G247700--Sobic007G070700 Sobic003G247700--Sobic009G245750 Sobic003G247700--Sobic001G253501 Sobic003G247700--Sobic002G077600 Sobic003G247700--Sobic007G083300 Sobic003G247700--Sobic008G103066 Sobic002G367600--Sobic002G028100 Sobic002G367600--Sobic001G535900 Sobic002G367600--Sobic001G297800 Sobic002G367600--Sobic002G211700 Sobic002G367600--Sobic009G001600 Sobic002G367600--Sobic003G247700 Sobic002G367600--Sobic002G089400 Sobic002G367600--Sobic008G103066 Sobic007G025300 Sobic007G025300 Sobic002G367600--Sobic007G025300 Sobic003G350900 Sobic003G350900 Sobic005G188000--Sobic003G350900 Sobic002G088000 Sobic002G088000 Sobic005G188000--Sobic002G088000 Sobic005G188000--Sobic008G064000 Sobic005G188000--Sobic003G156100 Sobic004G085100 Sobic004G085100 Sobic005G188000--Sobic004G085100 Sobic004G116200 Sobic004G116200 Sobic005G188000--Sobic004G116200 Sobic001G259300 Sobic001G259300 Sobic005G188000--Sobic001G259300 Sobic005G188000--Sobic007G083300 Sobic001G362900 Sobic001G362900 Sobic005G188000--Sobic001G362900
Octagon: transcription factors


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