Gene annotation
Transcriptome id Sobic.007G025300.1
Synonym Sb07g002210
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6PF71
Pfam PF00010
Panther DB PTHR23042 PTHR23042:SF63
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G06170 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g34320.1 : basic helix-loop-helix, putative, expressed
MaizeGDB (Corn) Zm00025a040333
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G103066 - -
2 Sobic.002G089400 DEF8 - Defensin and Defensin-like DEFL family, expressed -
3 Sobic.010G200400 AP2 domain containing protein, expressed -
4 Sobic.006G062700 transferase family protein, putative, expressed -
5 Sobic.005G174900 - -
6 Sobic.009G001600 "kafirin seed storage protein, similar to Beta-kafirin precursor"(PubMedID : 21853065)@PROLM24 - Prolamin precursor, expressed -
7 Sobic.002G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@"BG2(Ortholog in rice:Xu et al., 2015)"(PubMedID : 31659863)@cytochrome P450, putative, expressed -
8 Sobic.001G535900 aquaporin protein, putative, expressed K09873: aquaporin TIP
9 Sobic.007G205100 AP2 domain containing protein, expressed -
10 Sobic.001G249233 - -
11 Sobic.002G028100 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.002G211700 storage protein(PubMedID : 16668596)@"kafirin seed storage protein, delta-kafirin precursor"(PubMedID : 21853065)@PROLM23 - Prolamin precursor, expressed -
13 Sobic.003G247700 cold acclimation protein WCOR413, putative, expressed -
14 Sobic.009G245750 - -
15 Sobic.001G253501 - -
16 Sobic.001G297800 expressed protein -
17 Sobic.002G338600 expressed protein -
18 Sobic.001G112250 - -
19 Sobic.007G070700 OsFBX265 - F-box domain containing protein, expressed -
20 Sobic.010G109700 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -


Gene co-expression network
sample Sobic007G025300 Sobic007G025300 Sobic008G103066 Sobic008G103066 Sobic007G025300--Sobic008G103066 Sobic002G089400 Sobic002G089400 Sobic007G025300--Sobic002G089400 Sobic010G200400 Sobic010G200400 Sobic007G025300--Sobic010G200400 Sobic006G062700 Sobic006G062700 Sobic007G025300--Sobic006G062700 Sobic005G174900 Sobic005G174900 Sobic007G025300--Sobic005G174900 Sobic009G001600 Sobic009G001600 Sobic007G025300--Sobic009G001600 Sobic002G367600 Sobic002G367600 Sobic007G025300--Sobic002G367600 Sobic001G535900 Sobic001G535900 Sobic007G025300--Sobic001G535900 Sobic007G205100 Sobic007G205100 Sobic007G025300--Sobic007G205100 Sobic001G112250 Sobic001G112250 Sobic008G103066--Sobic001G112250 Sobic008G103066--Sobic009G001600 Sobic008G103066--Sobic007G025300 Sobic003G247700 Sobic003G247700 Sobic008G103066--Sobic003G247700 Sobic009G245750 Sobic009G245750 Sobic008G103066--Sobic009G245750 Sobic001G253501 Sobic001G253501 Sobic008G103066--Sobic001G253501 Sobic008G103066--Sobic001G535900 Sobic002G211700 Sobic002G211700 Sobic008G103066--Sobic002G211700 Sobic008G103066--Sobic006G062700 Sobic002G089400--Sobic010G200400 Sobic002G089400--Sobic007G205100 Sobic002G028100 Sobic002G028100 Sobic002G089400--Sobic002G028100 Sobic002G338600 Sobic002G338600 Sobic002G089400--Sobic002G338600 Sobic002G089400--Sobic007G025300 Sobic001G297800 Sobic001G297800 Sobic002G089400--Sobic001G297800 Sobic002G089400--Sobic002G367600 Sobic009G116500 Sobic009G116500 Sobic002G089400--Sobic009G116500 Sobic002G089400--Sobic001G535900 Sobic010G200400--Sobic007G205100 Sobic010G200400--Sobic002G089400 Sobic010G200400--Sobic002G338600 Sobic010G200400--Sobic002G028100 Sobic010G200400--Sobic007G025300 Sobic008G081700 Sobic008G081700 Sobic010G200400--Sobic008G081700 Sobic010G200200 Sobic010G200200 Sobic010G200400--Sobic010G200200 Sobic010G200400--Sobic002G367600 Sobic010G200400--Sobic009G116500 Sobic006G062700--Sobic005G174900 Sobic001G249233 Sobic001G249233 Sobic006G062700--Sobic001G249233 Sobic006G062700--Sobic008G103066 Sobic006G062700--Sobic007G025300 Sobic005G140400 Sobic005G140400 Sobic006G062700--Sobic005G140400 Sobic010G148600 Sobic010G148600 Sobic006G062700--Sobic010G148600 Sobic006G062700--Sobic001G112250 Sobic007G070700 Sobic007G070700 Sobic006G062700--Sobic007G070700 Sobic010G109700 Sobic010G109700 Sobic006G062700--Sobic010G109700 Sobic005G174900--Sobic001G249233 Sobic005G174900--Sobic006G062700 Sobic005G174900--Sobic005G140400 Sobic005G174900--Sobic007G025300 Sobic005G174900--Sobic008G103066 Sobic005G174900--Sobic010G148600 Sobic005G174900--Sobic001G253501 Sobic005G174900--Sobic009G245750 Sobic005G174900--Sobic007G070700 Sobic009G001600--Sobic002G211700 Sobic009G001600--Sobic001G535900 Sobic009G001600--Sobic003G247700 Sobic009G001600--Sobic009G245750 Sobic009G001600--Sobic001G253501 Sobic009G001600--Sobic002G367600 Sobic009G001600--Sobic008G103066 Sobic002G077600 Sobic002G077600 Sobic009G001600--Sobic002G077600 Sobic009G001600--Sobic007G070700 Sobic002G367600--Sobic002G028100 Sobic002G367600--Sobic001G535900 Sobic002G367600--Sobic001G297800 Sobic002G367600--Sobic002G211700 Sobic002G367600--Sobic009G001600 Sobic002G367600--Sobic003G247700 Sobic002G367600--Sobic002G089400 Sobic002G367600--Sobic008G103066 Sobic002G367600--Sobic007G025300 Sobic001G535900--Sobic002G211700 Sobic001G535900--Sobic009G001600 Sobic001G535900--Sobic002G367600 Sobic001G535900--Sobic003G247700 Sobic001G535900--Sobic001G297800 Sobic001G535900--Sobic002G028100 Sobic001G535900--Sobic008G103066 Sobic001G535900--Sobic009G245750 Sobic001G535900--Sobic001G253501 Sobic007G205100--Sobic010G200400 Sobic007G205100--Sobic002G338600 Sobic007G205100--Sobic002G089400 Sobic007G205100--Sobic002G028100 Sobic007G205100--Sobic010G200200 Sobic007G205100--Sobic008G081700 Sobic007G205100--Sobic002G367600 Sobic007G205100--Sobic007G025300 Sobic001G259250 Sobic001G259250 Sobic007G205100--Sobic001G259250
Octagon: transcription factors


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