Gene annotation
Transcriptome id Sobic.006G018400.2,Sobic.006G018400.1
Synonym Sb06g001720, AHG1,
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
Up-reguralion under drought (PubMedID : 24916767)
protein phosphatase 2C, putative, expressed
UniProt C5YC95
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF307
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K14497; protein phosphatase 2C
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT5G51760 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os01g62760.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a012428 , Zm00025a038704 , Zm00025a001791 , Zm00025a055673
Brachypodium KQK04770 , KQK04583 , KQK09009
Barley HORVU7Hr1G008520.2 , HORVU7Hr1G008560.2 , HORVU7Hr1G008550.1 , HORVU7Hr1G008560.1 , HORVU2Hr1G000090.4 , HORVU2Hr1G000090.3 , HORVU2Hr1G000090.2 , HORVU2Hr1G000090.1 , HORVU2Hr1G000090.6
Wheat -
Populus -


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cDNA sequences
Sobic.006G018400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G535900 aquaporin protein, putative, expressed K09873: aquaporin TIP
2 Sobic.002G211700 storage protein(PubMedID : 16668596)@"kafirin seed storage protein, delta-kafirin precursor"(PubMedID : 21853065)@PROLM23 - Prolamin precursor, expressed -
3 Sobic.002G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@"BG2(Ortholog in rice:Xu et al., 2015)"(PubMedID : 31659863)@cytochrome P450, putative, expressed -
4 Sobic.009G001600 "kafirin seed storage protein, similar to Beta-kafirin precursor"(PubMedID : 21853065)@PROLM24 - Prolamin precursor, expressed -
5 Sobic.001G297800 expressed protein -
6 Sobic.003G247700 cold acclimation protein WCOR413, putative, expressed -
7 Sobic.008G103066 - -
8 Sobic.002G028100 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.002G077600 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
10 Sobic.007G070700 OsFBX265 - F-box domain containing protein, expressed -
11 Sobic.007G083300 paired amphipathic helix repeat-containing protein, putative, expressed -
12 Sobic.003G156100 OsFBX117 - F-box domain containing protein, expressed -
13 Sobic.009G245750 - -
14 Sobic.001G253501 - -
15 Sobic.001G112250 - -
16 Sobic.007G025300 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.002G089400 DEF8 - Defensin and Defensin-like DEFL family, expressed -
18 Sobic.008G064000 LTPL36 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.K043500 MYB family transcription factor, putative, expressed -
20 Sobic.007G205100 AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic006G018400 Sobic006G018400 Sobic001G535900 Sobic001G535900 Sobic006G018400--Sobic001G535900 Sobic002G211700 Sobic002G211700 Sobic006G018400--Sobic002G211700 Sobic002G367600 Sobic002G367600 Sobic006G018400--Sobic002G367600 Sobic009G001600 Sobic009G001600 Sobic006G018400--Sobic009G001600 Sobic001G297800 Sobic001G297800 Sobic006G018400--Sobic001G297800 Sobic003G247700 Sobic003G247700 Sobic006G018400--Sobic003G247700 Sobic008G103066 Sobic008G103066 Sobic006G018400--Sobic008G103066 Sobic002G028100 Sobic002G028100 Sobic006G018400--Sobic002G028100 Sobic002G077600 Sobic002G077600 Sobic006G018400--Sobic002G077600 Sobic001G535900--Sobic002G211700 Sobic001G535900--Sobic009G001600 Sobic001G535900--Sobic002G367600 Sobic001G535900--Sobic003G247700 Sobic001G535900--Sobic001G297800 Sobic001G535900--Sobic002G028100 Sobic001G535900--Sobic008G103066 Sobic009G245750 Sobic009G245750 Sobic001G535900--Sobic009G245750 Sobic001G253501 Sobic001G253501 Sobic001G535900--Sobic001G253501 Sobic002G211700--Sobic001G535900 Sobic002G211700--Sobic009G001600 Sobic002G211700--Sobic003G247700 Sobic002G211700--Sobic002G367600 Sobic002G211700--Sobic009G245750 Sobic002G211700--Sobic001G253501 Sobic007G070700 Sobic007G070700 Sobic002G211700--Sobic007G070700 Sobic002G211700--Sobic002G077600 Sobic002G211700--Sobic001G297800 Sobic002G367600--Sobic002G028100 Sobic002G367600--Sobic001G535900 Sobic002G367600--Sobic001G297800 Sobic002G367600--Sobic002G211700 Sobic002G367600--Sobic009G001600 Sobic002G367600--Sobic003G247700 Sobic002G089400 Sobic002G089400 Sobic002G367600--Sobic002G089400 Sobic002G367600--Sobic008G103066 Sobic007G025300 Sobic007G025300 Sobic002G367600--Sobic007G025300 Sobic009G001600--Sobic002G211700 Sobic009G001600--Sobic001G535900 Sobic009G001600--Sobic003G247700 Sobic009G001600--Sobic009G245750 Sobic009G001600--Sobic001G253501 Sobic009G001600--Sobic002G367600 Sobic009G001600--Sobic008G103066 Sobic009G001600--Sobic002G077600 Sobic009G001600--Sobic007G070700 Sobic001G297800--Sobic002G367600 Sobic001G297800--Sobic001G535900 Sobic001G297800--Sobic002G028100 Sobic001G297800--Sobic002G211700 Sobic001G297800--Sobic002G089400 Sobic001G297800--Sobic009G001600 Sobic001G297800--Sobic003G247700 Sobic009G116500 Sobic009G116500 Sobic001G297800--Sobic009G116500 Sobic001G297800--Sobic006G018400 Sobic003G247700--Sobic002G211700 Sobic003G247700--Sobic009G001600 Sobic003G247700--Sobic001G535900 Sobic003G247700--Sobic007G070700 Sobic003G247700--Sobic009G245750 Sobic003G247700--Sobic001G253501 Sobic003G247700--Sobic002G077600 Sobic007G083300 Sobic007G083300 Sobic003G247700--Sobic007G083300 Sobic003G247700--Sobic008G103066 Sobic001G112250 Sobic001G112250 Sobic008G103066--Sobic001G112250 Sobic008G103066--Sobic009G001600 Sobic008G103066--Sobic007G025300 Sobic008G103066--Sobic003G247700 Sobic008G103066--Sobic009G245750 Sobic008G103066--Sobic001G253501 Sobic008G103066--Sobic001G535900 Sobic008G103066--Sobic002G211700 Sobic006G062700 Sobic006G062700 Sobic008G103066--Sobic006G062700 Sobic002G028100--Sobic002G367600 Sobic002G028100--Sobic001G297800 Sobic002G338600 Sobic002G338600 Sobic002G028100--Sobic002G338600 Sobic007G205100 Sobic007G205100 Sobic002G028100--Sobic007G205100 Sobic002G028100--Sobic002G089400 Sobic002G028100--Sobic001G535900 Sobic010G200400 Sobic010G200400 Sobic002G028100--Sobic010G200400 Sobic002G028100--Sobic009G001600 Sobic010G200200 Sobic010G200200 Sobic002G028100--Sobic010G200200 Sobic002G077600--Sobic007G070700 Sobic002G077600--Sobic007G083300 Sobic002G077600--Sobic001G253501 Sobic002G077600--Sobic009G245750 Sobic002G077600--Sobic003G247700 Sobic002G077600--Sobic001G112250 Sobic002G077600--Sobic009G001600 Sobic002G077600--Sobic002G211700 Sobic007G049400 Sobic007G049400 Sobic002G077600--Sobic007G049400
Octagon: transcription factors


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