Hb_057575_010

Information

Type -
Description -
Location Contig57575: 334-1498
Sequence    

Annotation

kegg
ID rcu:RCOM_0066480
description hypothetical protein
nr
ID XP_002531427.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SAC4
description F-box protein At1g10780 OS=Arabidopsis thaliana GN=At1g10780 PE=2 SV=1
trembl
ID B9SZK8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0066480 PE=4 SV=1
Gene Ontology
ID GO:0009506
description f-box protein at1g10780

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057575_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002030_010 0.1041938574 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
3 Hb_000059_190 0.1103331832 - - PREDICTED: uncharacterized protein LOC105121874 [Populus euphratica]
4 Hb_007760_060 0.1129213388 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
5 Hb_000802_070 0.1133657675 - - PREDICTED: LOW QUALITY PROTEIN: eugenol synthase 1-like [Jatropha curcas]
6 Hb_000127_240 0.1141085417 - - SAUR39 [Populus tomentosa]
7 Hb_006614_020 0.1165513015 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
8 Hb_003006_070 0.1209546444 - - aquaporin [Manihot esculenta]
9 Hb_000375_220 0.1251310698 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
10 Hb_000134_300 0.1271845841 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000010_430 0.1274626524 - - Esterase precursor, putative [Ricinus communis]
12 Hb_003085_070 0.1302336512 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
13 Hb_000375_100 0.1303761431 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
14 Hb_003185_040 0.1351467954 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
15 Hb_007044_240 0.1359067383 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
16 Hb_004128_150 0.1409379614 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
17 Hb_007576_090 0.1416416442 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
18 Hb_001623_250 0.1459129984 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
19 Hb_072952_010 0.1459694833 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
20 Hb_003680_180 0.1476946102 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_057575_010 Hb_057575_010 Hb_002030_010 Hb_002030_010 Hb_057575_010--Hb_002030_010 Hb_000059_190 Hb_000059_190 Hb_057575_010--Hb_000059_190 Hb_007760_060 Hb_007760_060 Hb_057575_010--Hb_007760_060 Hb_000802_070 Hb_000802_070 Hb_057575_010--Hb_000802_070 Hb_000127_240 Hb_000127_240 Hb_057575_010--Hb_000127_240 Hb_006614_020 Hb_006614_020 Hb_057575_010--Hb_006614_020 Hb_002030_010--Hb_000127_240 Hb_002030_010--Hb_006614_020 Hb_000375_220 Hb_000375_220 Hb_002030_010--Hb_000375_220 Hb_002030_010--Hb_007760_060 Hb_009847_010 Hb_009847_010 Hb_002030_010--Hb_009847_010 Hb_003006_070 Hb_003006_070 Hb_002030_010--Hb_003006_070 Hb_000059_190--Hb_000802_070 Hb_000134_300 Hb_000134_300 Hb_000059_190--Hb_000134_300 Hb_003680_180 Hb_003680_180 Hb_000059_190--Hb_003680_180 Hb_003185_040 Hb_003185_040 Hb_000059_190--Hb_003185_040 Hb_000175_080 Hb_000175_080 Hb_000059_190--Hb_000175_080 Hb_000336_010 Hb_000336_010 Hb_000059_190--Hb_000336_010 Hb_007760_060--Hb_000127_240 Hb_000375_100 Hb_000375_100 Hb_007760_060--Hb_000375_100 Hb_007576_090 Hb_007576_090 Hb_007760_060--Hb_007576_090 Hb_000010_430 Hb_000010_430 Hb_007760_060--Hb_000010_430 Hb_180535_010 Hb_180535_010 Hb_007760_060--Hb_180535_010 Hb_072952_010 Hb_072952_010 Hb_007760_060--Hb_072952_010 Hb_000802_070--Hb_000134_300 Hb_000802_070--Hb_003680_180 Hb_002790_010 Hb_002790_010 Hb_000802_070--Hb_002790_010 Hb_034420_010 Hb_034420_010 Hb_000802_070--Hb_034420_010 Hb_000802_070--Hb_000010_430 Hb_000127_240--Hb_006614_020 Hb_000127_240--Hb_000375_220 Hb_000127_240--Hb_007576_090 Hb_000127_240--Hb_180535_010 Hb_006614_020--Hb_000375_220 Hb_004128_150 Hb_004128_150 Hb_006614_020--Hb_004128_150 Hb_006614_020--Hb_007760_060 Hb_004007_050 Hb_004007_050 Hb_006614_020--Hb_004007_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.60584 1.21496 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0492649 0 0 0 0.238186

CAGE analysis