Hb_033044_010

Information

Type -
Description -
Location Contig33044: 746-1895
Sequence    

Annotation

kegg
ID rcu:RCOM_0708240
description guanine nucleotide-exchange, putative
nr
ID XP_012485781.1
description PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5-like isoform X3 [Gossypium raimondii]
swissprot
ID F4IXW2
description Brefeldin A-inhibited guanine nucleotide-exchange protein 5 OS=Arabidopsis thaliana GN=BIG5 PE=1 SV=2
trembl
ID A0A0D2PTI8
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G018700 PE=4 SV=1
Gene Ontology
ID GO:0005086
description brefeldin a-inhibited guanine nucleotide-exchange protein 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34733: 1299-1401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033044_010 0.0 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5-like isoform X3 [Gossypium raimondii]
2 Hb_000740_120 0.2720216803 - - -
3 Hb_002942_180 0.2929771354 - - phosphate transporter [Manihot esculenta]
4 Hb_131652_010 0.3069579139 - - hypothetical protein CICLE_v10010066mg [Citrus clementina]
5 Hb_011206_020 0.3232143394 - - -
6 Hb_052402_010 0.3365034909 - - -
7 Hb_001104_090 0.3444298972 - - hypothetical protein B456_009G408400 [Gossypium raimondii]
8 Hb_008226_110 0.3447963407 - - uncharacterized protein LOC100501343 [Zea mays]
9 Hb_005392_100 0.3476985256 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
10 Hb_001916_080 0.3537367489 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
11 Hb_053162_010 0.3544031733 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
12 Hb_021068_030 0.3561414938 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]
13 Hb_002815_070 0.3561434038 - - hypothetical protein PHAVU_005G048300g [Phaseolus vulgaris]
14 Hb_017462_010 0.3674629271 - - -
15 Hb_020532_010 0.3686857609 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
16 Hb_079212_010 0.3744717651 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006971_080 0.3759784709 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_013818_050 0.3760605616 - - PREDICTED: uncharacterized protein LOC105629143 isoform X2 [Jatropha curcas]
19 Hb_046707_010 0.3788307324 - - PREDICTED: uncharacterized protein LOC104887079 [Beta vulgaris subsp. vulgaris]
20 Hb_001517_030 0.3789358498 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_033044_010 Hb_033044_010 Hb_000740_120 Hb_000740_120 Hb_033044_010--Hb_000740_120 Hb_002942_180 Hb_002942_180 Hb_033044_010--Hb_002942_180 Hb_131652_010 Hb_131652_010 Hb_033044_010--Hb_131652_010 Hb_011206_020 Hb_011206_020 Hb_033044_010--Hb_011206_020 Hb_052402_010 Hb_052402_010 Hb_033044_010--Hb_052402_010 Hb_001104_090 Hb_001104_090 Hb_033044_010--Hb_001104_090 Hb_000740_120--Hb_011206_020 Hb_000740_120--Hb_052402_010 Hb_000740_120--Hb_131652_010 Hb_000740_120--Hb_002942_180 Hb_130367_010 Hb_130367_010 Hb_000740_120--Hb_130367_010 Hb_008226_110 Hb_008226_110 Hb_002942_180--Hb_008226_110 Hb_020532_010 Hb_020532_010 Hb_002942_180--Hb_020532_010 Hb_002942_180--Hb_131652_010 Hb_006971_080 Hb_006971_080 Hb_002942_180--Hb_006971_080 Hb_005392_100 Hb_005392_100 Hb_002942_180--Hb_005392_100 Hb_002267_120 Hb_002267_120 Hb_002942_180--Hb_002267_120 Hb_131652_010--Hb_011206_020 Hb_131652_010--Hb_008226_110 Hb_000098_300 Hb_000098_300 Hb_131652_010--Hb_000098_300 Hb_131652_010--Hb_005392_100 Hb_131652_010--Hb_006971_080 Hb_011206_020--Hb_000098_300 Hb_068014_010 Hb_068014_010 Hb_011206_020--Hb_068014_010 Hb_011206_020--Hb_052402_010 Hb_007083_020 Hb_007083_020 Hb_011206_020--Hb_007083_020 Hb_169170_010 Hb_169170_010 Hb_052402_010--Hb_169170_010 Hb_005318_020 Hb_005318_020 Hb_052402_010--Hb_005318_020 Hb_000248_030 Hb_000248_030 Hb_052402_010--Hb_000248_030 Hb_177103_010 Hb_177103_010 Hb_052402_010--Hb_177103_010 Hb_000248_010 Hb_000248_010 Hb_052402_010--Hb_000248_010 Hb_001104_090--Hb_005392_100 Hb_027892_070 Hb_027892_070 Hb_001104_090--Hb_027892_070 Hb_147355_030 Hb_147355_030 Hb_001104_090--Hb_147355_030 Hb_111189_010 Hb_111189_010 Hb_001104_090--Hb_111189_010 Hb_028995_030 Hb_028995_030 Hb_001104_090--Hb_028995_030 Hb_001104_090--Hb_008226_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.269649 0 0.784253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.285946 0 0 0.606991 0

CAGE analysis