Hb_012670_090

Information

Type -
Description -
Location Contig12670: 108096-111585
Sequence    

Annotation

kegg
ID pop:POPTR_0011s07660g
description POPTRDRAFT_728235; GDSL-motif lipase/hydrolase family protein
nr
ID XP_002316837.1
description GDSL-motif lipase/hydrolase family protein [Populus trichocarpa]
swissprot
ID Q6NMR9
description GDSL esterase/lipase At5g45920 OS=Arabidopsis thaliana GN=At5g45920 PE=2 SV=1
trembl
ID B9I1P0
description GDSL-motif lipase/hydrolase family protein OS=Populus trichocarpa GN=POPTR_0011s07660g PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at5g45920

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08064: 107950-111596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012670_090 0.0 - - GDSL-motif lipase/hydrolase family protein [Populus trichocarpa]
2 Hb_001766_130 0.0832509339 - - zinc finger protein, putative [Ricinus communis]
3 Hb_003339_010 0.0988189427 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
4 Hb_000230_300 0.0995907716 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
5 Hb_005762_010 0.1001991878 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
6 Hb_000684_070 0.1085596827 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]
7 Hb_008054_030 0.108602442 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
8 Hb_000680_170 0.1141932676 - - hypothetical protein JCGZ_24789 [Jatropha curcas]
9 Hb_096027_010 0.118270958 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_011472_030 0.1200967041 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
11 Hb_006651_030 0.1207134251 - - unnamed protein product [Homo sapiens]
12 Hb_004137_040 0.1214764033 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
13 Hb_185726_010 0.1227602385 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
14 Hb_011909_050 0.1236916668 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
15 Hb_000028_190 0.1239811093 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
16 Hb_000003_380 0.1256384465 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002221_060 0.1256709408 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
18 Hb_000336_290 0.1272451856 - - leucine-rich repeat protein, putative [Ricinus communis]
19 Hb_001158_130 0.1275318703 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
20 Hb_029977_030 0.1275891 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012670_090 Hb_012670_090 Hb_001766_130 Hb_001766_130 Hb_012670_090--Hb_001766_130 Hb_003339_010 Hb_003339_010 Hb_012670_090--Hb_003339_010 Hb_000230_300 Hb_000230_300 Hb_012670_090--Hb_000230_300 Hb_005762_010 Hb_005762_010 Hb_012670_090--Hb_005762_010 Hb_000684_070 Hb_000684_070 Hb_012670_090--Hb_000684_070 Hb_008054_030 Hb_008054_030 Hb_012670_090--Hb_008054_030 Hb_096027_010 Hb_096027_010 Hb_001766_130--Hb_096027_010 Hb_001766_130--Hb_005762_010 Hb_001766_130--Hb_003339_010 Hb_185726_010 Hb_185726_010 Hb_001766_130--Hb_185726_010 Hb_001766_130--Hb_000230_300 Hb_003339_010--Hb_008054_030 Hb_003339_010--Hb_005762_010 Hb_000028_190 Hb_000028_190 Hb_003339_010--Hb_000028_190 Hb_007163_100 Hb_007163_100 Hb_003339_010--Hb_007163_100 Hb_002150_090 Hb_002150_090 Hb_003339_010--Hb_002150_090 Hb_004137_040 Hb_004137_040 Hb_003339_010--Hb_004137_040 Hb_002221_060 Hb_002221_060 Hb_000230_300--Hb_002221_060 Hb_000003_380 Hb_000003_380 Hb_000230_300--Hb_000003_380 Hb_000230_300--Hb_004137_040 Hb_000230_300--Hb_005762_010 Hb_000103_200 Hb_000103_200 Hb_000230_300--Hb_000103_200 Hb_000230_300--Hb_000028_190 Hb_005762_010--Hb_008054_030 Hb_005762_010--Hb_000103_200 Hb_009023_010 Hb_009023_010 Hb_005762_010--Hb_009023_010 Hb_005762_010--Hb_004137_040 Hb_001158_130 Hb_001158_130 Hb_000684_070--Hb_001158_130 Hb_002119_100 Hb_002119_100 Hb_000684_070--Hb_002119_100 Hb_001199_110 Hb_001199_110 Hb_000684_070--Hb_001199_110 Hb_007483_090 Hb_007483_090 Hb_000684_070--Hb_007483_090 Hb_000684_070--Hb_000103_200 Hb_000599_150 Hb_000599_150 Hb_000684_070--Hb_000599_150 Hb_008054_030--Hb_000028_190 Hb_008054_030--Hb_007163_100 Hb_008054_030--Hb_002150_090 Hb_008221_200 Hb_008221_200 Hb_008054_030--Hb_008221_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.538173 2.53722 3.23605 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0846332 0 2.63178

CAGE analysis