Hb_007380_080

Information

Type transcription factor
Description TF Family: G2-like
Location Contig7380: 107401-110850
Sequence    

Annotation

kegg
ID rcu:RCOM_0820570
description transcription factor, putative
nr
ID XP_012082211.1
description PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
swissprot
ID Q9SAK5
description Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2
trembl
ID A0A067K9Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16414 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor apl-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56239: 107584-108694 , PASA_asmbl_56240: 109698-110116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007380_080 0.0 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
2 Hb_000540_150 0.0754812901 - - PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
3 Hb_000429_200 0.0941779873 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
4 Hb_002942_080 0.1002396566 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
5 Hb_025557_020 0.1005130887 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
6 Hb_004195_280 0.1040470218 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
7 Hb_000116_170 0.106287901 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
8 Hb_007668_040 0.1063724144 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
9 Hb_001437_100 0.1063910124 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
10 Hb_000522_090 0.1075593964 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
11 Hb_000364_060 0.1103811147 - - JHL03K20.4 [Jatropha curcas]
12 Hb_002097_090 0.1114826543 - - Splicing factor 3A subunit, putative [Ricinus communis]
13 Hb_000866_470 0.11206254 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
14 Hb_002048_090 0.1124710977 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
15 Hb_002883_010 0.112895966 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
16 Hb_000059_150 0.1138888114 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
17 Hb_009913_050 0.1158688903 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
18 Hb_008595_010 0.1165024489 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
19 Hb_000358_250 0.1166198148 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
20 Hb_000523_090 0.1175361175 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]

Gene co-expression network

sample Hb_007380_080 Hb_007380_080 Hb_000540_150 Hb_000540_150 Hb_007380_080--Hb_000540_150 Hb_000429_200 Hb_000429_200 Hb_007380_080--Hb_000429_200 Hb_002942_080 Hb_002942_080 Hb_007380_080--Hb_002942_080 Hb_025557_020 Hb_025557_020 Hb_007380_080--Hb_025557_020 Hb_004195_280 Hb_004195_280 Hb_007380_080--Hb_004195_280 Hb_000116_170 Hb_000116_170 Hb_007380_080--Hb_000116_170 Hb_000866_470 Hb_000866_470 Hb_000540_150--Hb_000866_470 Hb_000358_250 Hb_000358_250 Hb_000540_150--Hb_000358_250 Hb_001863_260 Hb_001863_260 Hb_000540_150--Hb_001863_260 Hb_000540_150--Hb_002942_080 Hb_000540_150--Hb_000429_200 Hb_000522_090 Hb_000522_090 Hb_000429_200--Hb_000522_090 Hb_007044_080 Hb_007044_080 Hb_000429_200--Hb_007044_080 Hb_000429_200--Hb_000358_250 Hb_000116_180 Hb_000116_180 Hb_000429_200--Hb_000116_180 Hb_000803_300 Hb_000803_300 Hb_000429_200--Hb_000803_300 Hb_000179_020 Hb_000179_020 Hb_000429_200--Hb_000179_020 Hb_007668_040 Hb_007668_040 Hb_002942_080--Hb_007668_040 Hb_009913_050 Hb_009913_050 Hb_002942_080--Hb_009913_050 Hb_003006_060 Hb_003006_060 Hb_002942_080--Hb_003006_060 Hb_002675_060 Hb_002675_060 Hb_002942_080--Hb_002675_060 Hb_005214_060 Hb_005214_060 Hb_002942_080--Hb_005214_060 Hb_024990_010 Hb_024990_010 Hb_002942_080--Hb_024990_010 Hb_000318_140 Hb_000318_140 Hb_025557_020--Hb_000318_140 Hb_164010_020 Hb_164010_020 Hb_025557_020--Hb_164010_020 Hb_000631_150 Hb_000631_150 Hb_025557_020--Hb_000631_150 Hb_018663_020 Hb_018663_020 Hb_025557_020--Hb_018663_020 Hb_025557_020--Hb_000116_170 Hb_001226_180 Hb_001226_180 Hb_025557_020--Hb_001226_180 Hb_002174_060 Hb_002174_060 Hb_004195_280--Hb_002174_060 Hb_010423_020 Hb_010423_020 Hb_004195_280--Hb_010423_020 Hb_009265_080 Hb_009265_080 Hb_004195_280--Hb_009265_080 Hb_171900_100 Hb_171900_100 Hb_004195_280--Hb_171900_100 Hb_004195_280--Hb_003006_060 Hb_004195_280--Hb_000179_020 Hb_004608_020 Hb_004608_020 Hb_000116_170--Hb_004608_020 Hb_000116_170--Hb_000631_150 Hb_006922_080 Hb_006922_080 Hb_000116_170--Hb_006922_080 Hb_000849_100 Hb_000849_100 Hb_000116_170--Hb_000849_100 Hb_009118_010 Hb_009118_010 Hb_000116_170--Hb_009118_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6916 11.0641 10.1005 4.98538 39.7201 42.2669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.9323 12.2892 6.90781 13.3249 11.3646

CAGE analysis