Hb_004225_150

Information

Type transcription factor
Description TF Family: C3H
Location Contig4225: 160887-162573
Sequence    

Annotation

kegg
ID rcu:RCOM_0544970
description hypothetical protein
nr
ID XP_012065104.1
description PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
swissprot
ID P47980
description Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
trembl
ID A0A067L6B1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05483 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41824: 160919-161753 , PASA_asmbl_41825: 161397-162423
cDNA
(Sanger)
(ID:Location)		 033_G22.ab1: 161026-161753

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004225_150 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
2 Hb_001035_070 0.1875022958 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
3 Hb_009314_010 0.1980306139 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
4 Hb_017434_050 0.1991200669 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
5 Hb_001894_170 0.2043807357 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
6 Hb_000010_410 0.2048195272 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
7 Hb_006816_450 0.2064238657 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000723_190 0.2112494901 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
9 Hb_005614_050 0.2113371008 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
10 Hb_002756_020 0.2114736521 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
11 Hb_004871_050 0.2129849151 - - hypothetical protein F383_22684 [Gossypium arboreum]
12 Hb_001005_070 0.2138592117 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
13 Hb_001100_010 0.2152161371 - - F-box/FBD/LRR-repeat protein [Medicago truncatula]
14 Hb_005489_100 0.2162986477 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001538_140 0.2211796911 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
16 Hb_004429_070 0.221193166 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
17 Hb_152439_020 0.2212094683 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
18 Hb_000432_050 0.2251183402 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
19 Hb_002290_040 0.2260137806 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000368_060 0.2265047334 - - thioredoxin H-type 6 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004225_150 Hb_004225_150 Hb_001035_070 Hb_001035_070 Hb_004225_150--Hb_001035_070 Hb_009314_010 Hb_009314_010 Hb_004225_150--Hb_009314_010 Hb_017434_050 Hb_017434_050 Hb_004225_150--Hb_017434_050 Hb_001894_170 Hb_001894_170 Hb_004225_150--Hb_001894_170 Hb_000010_410 Hb_000010_410 Hb_004225_150--Hb_000010_410 Hb_006816_450 Hb_006816_450 Hb_004225_150--Hb_006816_450 Hb_001053_150 Hb_001053_150 Hb_001035_070--Hb_001053_150 Hb_004429_070 Hb_004429_070 Hb_001035_070--Hb_004429_070 Hb_000141_030 Hb_000141_030 Hb_001035_070--Hb_000141_030 Hb_001277_090 Hb_001277_090 Hb_001035_070--Hb_001277_090 Hb_002078_480 Hb_002078_480 Hb_001035_070--Hb_002078_480 Hb_029510_040 Hb_029510_040 Hb_001035_070--Hb_029510_040 Hb_000161_150 Hb_000161_150 Hb_009314_010--Hb_000161_150 Hb_000432_050 Hb_000432_050 Hb_009314_010--Hb_000432_050 Hb_009314_010--Hb_006816_450 Hb_002756_020 Hb_002756_020 Hb_009314_010--Hb_002756_020 Hb_005224_010 Hb_005224_010 Hb_009314_010--Hb_005224_010 Hb_000771_130 Hb_000771_130 Hb_009314_010--Hb_000771_130 Hb_017434_050--Hb_001894_170 Hb_006594_020 Hb_006594_020 Hb_017434_050--Hb_006594_020 Hb_000373_180 Hb_000373_180 Hb_017434_050--Hb_000373_180 Hb_000723_190 Hb_000723_190 Hb_017434_050--Hb_000723_190 Hb_004414_050 Hb_004414_050 Hb_017434_050--Hb_004414_050 Hb_017434_050--Hb_009314_010 Hb_002759_240 Hb_002759_240 Hb_001894_170--Hb_002759_240 Hb_000264_020 Hb_000264_020 Hb_001894_170--Hb_000264_020 Hb_001894_170--Hb_000723_190 Hb_001894_170--Hb_000373_180 Hb_001894_170--Hb_006594_020 Hb_000010_410--Hb_001053_150 Hb_002239_060 Hb_002239_060 Hb_000010_410--Hb_002239_060 Hb_005060_020 Hb_005060_020 Hb_000010_410--Hb_005060_020 Hb_000010_410--Hb_005224_010 Hb_005489_100 Hb_005489_100 Hb_000010_410--Hb_005489_100 Hb_001222_050 Hb_001222_050 Hb_000010_410--Hb_001222_050 Hb_006816_450--Hb_002756_020 Hb_004410_100 Hb_004410_100 Hb_006816_450--Hb_004410_100 Hb_007161_010 Hb_007161_010 Hb_006816_450--Hb_007161_010 Hb_001959_160 Hb_001959_160 Hb_006816_450--Hb_001959_160 Hb_002290_040 Hb_002290_040 Hb_006816_450--Hb_002290_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28437 0 0.333803 0.227349 0.356228 0.584063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.823381 1.97706 5.24784 1.35328 0.0703215

CAGE analysis