Hb_003142_050

Information

Type -
Description -
Location Contig3142: 32499-34322
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003142_050 0.0 - - -
2 Hb_001035_030 0.1584945367 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
3 Hb_054301_010 0.1585762595 - - hypothetical protein EUTSA_v10006737mg [Eutrema salsugineum]
4 Hb_030565_070 0.1697601768 - - -
5 Hb_001153_080 0.1856303233 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
6 Hb_001902_080 0.1903575117 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001341_130 0.1903969676 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000107_370 0.1959767686 - - PREDICTED: uncharacterized protein At2g17340-like isoform X1 [Jatropha curcas]
9 Hb_005701_020 0.1982071848 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
10 Hb_007441_180 0.1991628461 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010710_020 0.1999803466 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
12 Hb_003751_120 0.2002425526 - - -
13 Hb_000866_300 0.2006950455 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
14 Hb_000500_280 0.2015084006 - - Brassinosteroid-regulated protein BRU1 precursor, putative [Ricinus communis]
15 Hb_000085_300 0.2031538718 - - -
16 Hb_000163_200 0.2042395074 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
17 Hb_004204_030 0.205582963 - - unknown [Populus trichocarpa]
18 Hb_001951_110 0.2075160654 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
19 Hb_000261_460 0.2088018669 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
20 Hb_003226_150 0.2096785616 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]

Gene co-expression network

sample Hb_003142_050 Hb_003142_050 Hb_001035_030 Hb_001035_030 Hb_003142_050--Hb_001035_030 Hb_054301_010 Hb_054301_010 Hb_003142_050--Hb_054301_010 Hb_030565_070 Hb_030565_070 Hb_003142_050--Hb_030565_070 Hb_001153_080 Hb_001153_080 Hb_003142_050--Hb_001153_080 Hb_001902_080 Hb_001902_080 Hb_003142_050--Hb_001902_080 Hb_001341_130 Hb_001341_130 Hb_003142_050--Hb_001341_130 Hb_001035_030--Hb_054301_010 Hb_001804_040 Hb_001804_040 Hb_001035_030--Hb_001804_040 Hb_001104_120 Hb_001104_120 Hb_001035_030--Hb_001104_120 Hb_001454_330 Hb_001454_330 Hb_001035_030--Hb_001454_330 Hb_004204_030 Hb_004204_030 Hb_001035_030--Hb_004204_030 Hb_001951_110 Hb_001951_110 Hb_001035_030--Hb_001951_110 Hb_054301_010--Hb_004204_030 Hb_000866_300 Hb_000866_300 Hb_054301_010--Hb_000866_300 Hb_054301_010--Hb_001804_040 Hb_054301_010--Hb_001951_110 Hb_003001_060 Hb_003001_060 Hb_054301_010--Hb_003001_060 Hb_000163_200 Hb_000163_200 Hb_030565_070--Hb_000163_200 Hb_010710_020 Hb_010710_020 Hb_030565_070--Hb_010710_020 Hb_000107_370 Hb_000107_370 Hb_030565_070--Hb_000107_370 Hb_030565_070--Hb_001153_080 Hb_001722_040 Hb_001722_040 Hb_030565_070--Hb_001722_040 Hb_005618_040 Hb_005618_040 Hb_030565_070--Hb_005618_040 Hb_000045_190 Hb_000045_190 Hb_001153_080--Hb_000045_190 Hb_000161_050 Hb_000161_050 Hb_001153_080--Hb_000161_050 Hb_001153_080--Hb_001341_130 Hb_000634_050 Hb_000634_050 Hb_001153_080--Hb_000634_050 Hb_011609_180 Hb_011609_180 Hb_001153_080--Hb_011609_180 Hb_000188_130 Hb_000188_130 Hb_001153_080--Hb_000188_130 Hb_009954_040 Hb_009954_040 Hb_001902_080--Hb_009954_040 Hb_002918_200 Hb_002918_200 Hb_001902_080--Hb_002918_200 Hb_004108_230 Hb_004108_230 Hb_001902_080--Hb_004108_230 Hb_003175_040 Hb_003175_040 Hb_001902_080--Hb_003175_040 Hb_002701_240 Hb_002701_240 Hb_001902_080--Hb_002701_240 Hb_000051_040 Hb_000051_040 Hb_001902_080--Hb_000051_040 Hb_001341_130--Hb_000188_130 Hb_001341_130--Hb_000045_190 Hb_002529_100 Hb_002529_100 Hb_001341_130--Hb_002529_100 Hb_003581_090 Hb_003581_090 Hb_001341_130--Hb_003581_090 Hb_002759_230 Hb_002759_230 Hb_001341_130--Hb_002759_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.1764 0.0773422 0.360214 0 1.89011 0.917302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94731 3.2682 1.33637 1.78595 0.245051

CAGE analysis