Hb_002890_230

Information

Type -
Description -
Location Contig2890: 322507-322844
Sequence    

Annotation

kegg
ID mtr:MTR_5g084920
description hypothetical protein
nr
ID XP_003616850.1
description hypothetical protein MTR_5g084920 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7K7H8
description Transferase family protein OS=Medicago truncatula GN=MTR_5g084920 PE=4 SV=1
Gene Ontology
ID GO:0016747
description 3 -n-debenzoyl-2 -deoxytaxol n-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_230 0.0 - - hypothetical protein MTR_5g084920 [Medicago truncatula]
2 Hb_000012_300 0.2302346141 - - -
3 Hb_041774_010 0.2406004556 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_005656_060 0.2411855006 - - -
5 Hb_003073_130 0.2426652214 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
6 Hb_001775_040 0.2470630935 - - -
7 Hb_000457_160 0.2582345597 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
8 Hb_001662_160 0.2611549294 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
9 Hb_001767_020 0.2816779194 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
10 Hb_001668_030 0.2842900272 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006198_050 0.2867321082 - - protein with unknown function [Ricinus communis]
12 Hb_002027_340 0.2872637067 - - -
13 Hb_015930_010 0.291273345 - - uncharacterized protein LOC100499930 [Glycine max]
14 Hb_003747_130 0.291589757 - - -
15 Hb_002232_450 0.2952812356 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
16 Hb_011640_020 0.2995507076 - - hypothetical protein VITISV_036432 [Vitis vinifera]
17 Hb_000117_020 0.3000168443 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
18 Hb_005867_080 0.3030760628 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]
19 Hb_103351_010 0.3040641903 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
20 Hb_009265_020 0.3043088229 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002890_230 Hb_002890_230 Hb_000012_300 Hb_000012_300 Hb_002890_230--Hb_000012_300 Hb_041774_010 Hb_041774_010 Hb_002890_230--Hb_041774_010 Hb_005656_060 Hb_005656_060 Hb_002890_230--Hb_005656_060 Hb_003073_130 Hb_003073_130 Hb_002890_230--Hb_003073_130 Hb_001775_040 Hb_001775_040 Hb_002890_230--Hb_001775_040 Hb_000457_160 Hb_000457_160 Hb_002890_230--Hb_000457_160 Hb_000012_300--Hb_001775_040 Hb_001767_020 Hb_001767_020 Hb_000012_300--Hb_001767_020 Hb_002232_450 Hb_002232_450 Hb_000012_300--Hb_002232_450 Hb_001241_040 Hb_001241_040 Hb_000012_300--Hb_001241_040 Hb_000012_300--Hb_041774_010 Hb_041774_010--Hb_001767_020 Hb_041774_010--Hb_003073_130 Hb_098466_010 Hb_098466_010 Hb_041774_010--Hb_098466_010 Hb_001668_030 Hb_001668_030 Hb_041774_010--Hb_001668_030 Hb_058884_010 Hb_058884_010 Hb_041774_010--Hb_058884_010 Hb_005867_080 Hb_005867_080 Hb_041774_010--Hb_005867_080 Hb_005656_060--Hb_000457_160 Hb_005656_060--Hb_005867_080 Hb_022288_020 Hb_022288_020 Hb_005656_060--Hb_022288_020 Hb_005656_060--Hb_041774_010 Hb_005656_060--Hb_001767_020 Hb_010317_030 Hb_010317_030 Hb_005656_060--Hb_010317_030 Hb_000061_410 Hb_000061_410 Hb_003073_130--Hb_000061_410 Hb_000155_070 Hb_000155_070 Hb_003073_130--Hb_000155_070 Hb_014067_010 Hb_014067_010 Hb_003073_130--Hb_014067_010 Hb_000907_100 Hb_000907_100 Hb_003073_130--Hb_000907_100 Hb_003627_020 Hb_003627_020 Hb_003073_130--Hb_003627_020 Hb_004884_060 Hb_004884_060 Hb_003073_130--Hb_004884_060 Hb_001775_040--Hb_001767_020 Hb_004460_020 Hb_004460_020 Hb_001775_040--Hb_004460_020 Hb_001775_040--Hb_001668_030 Hb_004480_070 Hb_004480_070 Hb_001775_040--Hb_004480_070 Hb_004102_130 Hb_004102_130 Hb_001775_040--Hb_004102_130 Hb_006198_050 Hb_006198_050 Hb_000457_160--Hb_006198_050 Hb_011640_020 Hb_011640_020 Hb_000457_160--Hb_011640_020 Hb_000208_290 Hb_000208_290 Hb_000457_160--Hb_000208_290 Hb_000457_160--Hb_022288_020 Hb_002027_340 Hb_002027_340 Hb_000457_160--Hb_002027_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.387888 0 0 0 0.572204 2.19179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.2674 0.775808 0.123207 0

CAGE analysis