Hb_002615_040

Information

Type -
Description -
Location Contig2615: 49045-50361
Sequence    

Annotation

kegg
ID vvi:100255166
description uncharacterized LOC100255166
nr
ID XP_011004240.1
description PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
swissprot
ID -
description -
trembl
ID F6HA38
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g03420 PE=4 SV=1
Gene Ontology
ID GO:0005515
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27344: 48625-50593
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002615_040 0.0 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
2 Hb_000554_010 0.1362255729 - - transporter, putative [Ricinus communis]
3 Hb_005725_080 0.1479586994 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
4 Hb_000316_130 0.1546650019 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
5 Hb_000170_250 0.1547744547 - - hypothetical protein F775_29828 [Aegilops tauschii]
6 Hb_002681_050 0.1584735181 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
7 Hb_004052_040 0.1593369122 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
8 Hb_005306_100 0.1623226738 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
9 Hb_000442_150 0.1625009715 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
10 Hb_000307_140 0.1665027986 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
11 Hb_004007_160 0.1692031804 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
12 Hb_000599_180 0.1711788999 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_001049_090 0.1715299181 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
14 Hb_004705_040 0.1720534863 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
15 Hb_000025_090 0.172289839 - - tubulin beta chain, putative [Ricinus communis]
16 Hb_000249_070 0.1729488718 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
17 Hb_002671_140 0.1740608689 - - calcium-dependent protein kinase [Hevea brasiliensis]
18 Hb_007477_080 0.1755129494 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002046_190 0.1800239475 - - calcium-binding family protein [Populus trichocarpa]
20 Hb_000050_190 0.1800664201 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002615_040 Hb_002615_040 Hb_000554_010 Hb_000554_010 Hb_002615_040--Hb_000554_010 Hb_005725_080 Hb_005725_080 Hb_002615_040--Hb_005725_080 Hb_000316_130 Hb_000316_130 Hb_002615_040--Hb_000316_130 Hb_000170_250 Hb_000170_250 Hb_002615_040--Hb_000170_250 Hb_002681_050 Hb_002681_050 Hb_002615_040--Hb_002681_050 Hb_004052_040 Hb_004052_040 Hb_002615_040--Hb_004052_040 Hb_004007_160 Hb_004007_160 Hb_000554_010--Hb_004007_160 Hb_004705_040 Hb_004705_040 Hb_000554_010--Hb_004705_040 Hb_004375_130 Hb_004375_130 Hb_000554_010--Hb_004375_130 Hb_000281_110 Hb_000281_110 Hb_000554_010--Hb_000281_110 Hb_007479_050 Hb_007479_050 Hb_000554_010--Hb_007479_050 Hb_000649_050 Hb_000649_050 Hb_000554_010--Hb_000649_050 Hb_000442_150 Hb_000442_150 Hb_005725_080--Hb_000442_150 Hb_000307_140 Hb_000307_140 Hb_005725_080--Hb_000307_140 Hb_000699_140 Hb_000699_140 Hb_005725_080--Hb_000699_140 Hb_008246_040 Hb_008246_040 Hb_005725_080--Hb_008246_040 Hb_001357_180 Hb_001357_180 Hb_005725_080--Hb_001357_180 Hb_000031_060 Hb_000031_060 Hb_005725_080--Hb_000031_060 Hb_000012_430 Hb_000012_430 Hb_000316_130--Hb_000012_430 Hb_032808_020 Hb_032808_020 Hb_000316_130--Hb_032808_020 Hb_000009_080 Hb_000009_080 Hb_000316_130--Hb_000009_080 Hb_000316_130--Hb_000307_140 Hb_000670_050 Hb_000670_050 Hb_000316_130--Hb_000670_050 Hb_000220_130 Hb_000220_130 Hb_000316_130--Hb_000220_130 Hb_000170_250--Hb_005725_080 Hb_001357_140 Hb_001357_140 Hb_000170_250--Hb_001357_140 Hb_004204_140 Hb_004204_140 Hb_000170_250--Hb_004204_140 Hb_001128_060 Hb_001128_060 Hb_000170_250--Hb_001128_060 Hb_000134_110 Hb_000134_110 Hb_000170_250--Hb_000134_110 Hb_000606_090 Hb_000606_090 Hb_002681_050--Hb_000606_090 Hb_007477_080 Hb_007477_080 Hb_002681_050--Hb_007477_080 Hb_001377_320 Hb_001377_320 Hb_002681_050--Hb_001377_320 Hb_073171_040 Hb_073171_040 Hb_002681_050--Hb_073171_040 Hb_008511_130 Hb_008511_130 Hb_002681_050--Hb_008511_130 Hb_002529_060 Hb_002529_060 Hb_002681_050--Hb_002529_060 Hb_006478_020 Hb_006478_020 Hb_004052_040--Hb_006478_020 Hb_169631_010 Hb_169631_010 Hb_004052_040--Hb_169631_010 Hb_000249_070 Hb_000249_070 Hb_004052_040--Hb_000249_070 Hb_059480_010 Hb_059480_010 Hb_004052_040--Hb_059480_010 Hb_004191_020 Hb_004191_020 Hb_004052_040--Hb_004191_020 Hb_002685_110 Hb_002685_110 Hb_004052_040--Hb_002685_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
135.286 56.9445 47.3591 112.477 30.2221 88.7715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.4631 25.8088 70.231 10.482 48.3249

CAGE analysis