Hb_004204_140

Information

Type transcription factor
Description TF Family: C2H2
Location Contig4204: 90929-92584
Sequence    

Annotation

kegg
ID rcu:RCOM_1470470
description hypothetical protein
nr
ID XP_002514689.1
description hypothetical protein RCOM_1470470 [Ricinus communis]
swissprot
ID Q9SHD0
description Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1
trembl
ID B9RLS0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1470470 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein zat4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41537: 90408-90512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_140 0.0 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
2 Hb_003206_070 0.1140048006 - - organic anion transporter, putative [Ricinus communis]
3 Hb_000676_250 0.1222880402 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
4 Hb_032215_050 0.1239730974 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
5 Hb_003943_040 0.127947727 - - DNA binding protein, putative [Ricinus communis]
6 Hb_000085_400 0.1309072165 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
7 Hb_003571_030 0.1309936844 - - hypothetical protein JCGZ_25894 [Jatropha curcas]
8 Hb_000928_020 0.131599523 - - hypothetical protein CICLE_v10013682mg [Citrus clementina]
9 Hb_000281_110 0.1323801959 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
10 Hb_027746_010 0.132543006 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD6 isoform X1 [Jatropha curcas]
11 Hb_000335_030 0.1336363671 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
12 Hb_000409_020 0.1340767263 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
13 Hb_000202_040 0.1392338529 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
14 Hb_005433_040 0.1407145242 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
15 Hb_000648_110 0.1407780543 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
16 Hb_001454_130 0.1416119795 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
17 Hb_035273_030 0.141957762 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
18 Hb_000976_410 0.1425171286 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
19 Hb_001100_060 0.1427457474 - - glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]
20 Hb_033594_030 0.1466234989 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_004204_140 Hb_004204_140 Hb_003206_070 Hb_003206_070 Hb_004204_140--Hb_003206_070 Hb_000676_250 Hb_000676_250 Hb_004204_140--Hb_000676_250 Hb_032215_050 Hb_032215_050 Hb_004204_140--Hb_032215_050 Hb_003943_040 Hb_003943_040 Hb_004204_140--Hb_003943_040 Hb_000085_400 Hb_000085_400 Hb_004204_140--Hb_000085_400 Hb_003571_030 Hb_003571_030 Hb_004204_140--Hb_003571_030 Hb_000409_020 Hb_000409_020 Hb_003206_070--Hb_000409_020 Hb_001818_090 Hb_001818_090 Hb_003206_070--Hb_001818_090 Hb_003206_070--Hb_000676_250 Hb_005663_060 Hb_005663_060 Hb_003206_070--Hb_005663_060 Hb_003177_030 Hb_003177_030 Hb_003206_070--Hb_003177_030 Hb_007441_120 Hb_007441_120 Hb_003206_070--Hb_007441_120 Hb_000676_250--Hb_003177_030 Hb_023344_120 Hb_023344_120 Hb_000676_250--Hb_023344_120 Hb_027380_130 Hb_027380_130 Hb_000676_250--Hb_027380_130 Hb_000019_030 Hb_000019_030 Hb_000676_250--Hb_000019_030 Hb_001711_020 Hb_001711_020 Hb_000676_250--Hb_001711_020 Hb_005144_160 Hb_005144_160 Hb_000676_250--Hb_005144_160 Hb_032215_050--Hb_003943_040 Hb_000080_190 Hb_000080_190 Hb_032215_050--Hb_000080_190 Hb_032215_050--Hb_003206_070 Hb_002903_090 Hb_002903_090 Hb_032215_050--Hb_002903_090 Hb_004724_420 Hb_004724_420 Hb_032215_050--Hb_004724_420 Hb_002687_110 Hb_002687_110 Hb_032215_050--Hb_002687_110 Hb_003943_040--Hb_002687_110 Hb_004738_040 Hb_004738_040 Hb_003943_040--Hb_004738_040 Hb_001277_330 Hb_001277_330 Hb_003943_040--Hb_001277_330 Hb_003943_040--Hb_000409_020 Hb_011316_040 Hb_011316_040 Hb_003943_040--Hb_011316_040 Hb_003943_040--Hb_004724_420 Hb_000749_220 Hb_000749_220 Hb_000085_400--Hb_000749_220 Hb_029879_070 Hb_029879_070 Hb_000085_400--Hb_029879_070 Hb_001163_100 Hb_001163_100 Hb_000085_400--Hb_001163_100 Hb_001024_020 Hb_001024_020 Hb_000085_400--Hb_001024_020 Hb_002685_210 Hb_002685_210 Hb_000085_400--Hb_002685_210 Hb_044736_010 Hb_044736_010 Hb_000085_400--Hb_044736_010 Hb_003571_030--Hb_027380_130 Hb_084646_010 Hb_084646_010 Hb_003571_030--Hb_084646_010 Hb_000483_220 Hb_000483_220 Hb_003571_030--Hb_000483_220 Hb_000207_330 Hb_000207_330 Hb_003571_030--Hb_000207_330 Hb_000646_050 Hb_000646_050 Hb_003571_030--Hb_000646_050 Hb_005396_150 Hb_005396_150 Hb_003571_030--Hb_005396_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.77769 0.793259 1.02321 3.60383 1.98721 2.35737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.37869 1.47016 4.67518 1.5833 2.11989

CAGE analysis