Hb_001214_120

Information

Type -
Description -
Location Contig1214: 123828-126553
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_120 0.0 - - -
2 Hb_000230_380 0.1726537871 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Jatropha curcas]
3 Hb_005839_110 0.1883220406 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
4 Hb_005000_070 0.1922059971 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
5 Hb_005539_240 0.1926859394 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
6 Hb_000853_410 0.1929658828 - - -
7 Hb_000061_300 0.195973294 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
8 Hb_000165_010 0.1970828669 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
9 Hb_000368_060 0.1995428905 - - thioredoxin H-type 6 [Hevea brasiliensis]
10 Hb_000749_250 0.199641846 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
11 Hb_168905_010 0.200405853 - - PREDICTED: AP-1 complex subunit sigma-1 isoform X2 [Cicer arietinum]
12 Hb_001232_130 0.2039160125 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
13 Hb_001159_120 0.2046640099 - - PREDICTED: uncharacterized protein LOC105645945 [Jatropha curcas]
14 Hb_000562_040 0.2066499403 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
15 Hb_000563_250 0.2083298899 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
16 Hb_000454_070 0.2106408419 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
17 Hb_009485_010 0.212003124 - - PREDICTED: uncharacterized protein LOC105641071 [Jatropha curcas]
18 Hb_004968_100 0.2129358594 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
19 Hb_000350_090 0.2148044188 transcription factor TF Family: GeBP transcription regulator, putative [Ricinus communis]
20 Hb_001616_030 0.2159663856 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001214_120 Hb_001214_120 Hb_000230_380 Hb_000230_380 Hb_001214_120--Hb_000230_380 Hb_005839_110 Hb_005839_110 Hb_001214_120--Hb_005839_110 Hb_005000_070 Hb_005000_070 Hb_001214_120--Hb_005000_070 Hb_005539_240 Hb_005539_240 Hb_001214_120--Hb_005539_240 Hb_000853_410 Hb_000853_410 Hb_001214_120--Hb_000853_410 Hb_000061_300 Hb_000061_300 Hb_001214_120--Hb_000061_300 Hb_000230_380--Hb_005000_070 Hb_004951_040 Hb_004951_040 Hb_000230_380--Hb_004951_040 Hb_031862_110 Hb_031862_110 Hb_000230_380--Hb_031862_110 Hb_001616_030 Hb_001616_030 Hb_000230_380--Hb_001616_030 Hb_020301_040 Hb_020301_040 Hb_000230_380--Hb_020301_040 Hb_000563_250 Hb_000563_250 Hb_000230_380--Hb_000563_250 Hb_000162_140 Hb_000162_140 Hb_005839_110--Hb_000162_140 Hb_003147_050 Hb_003147_050 Hb_005839_110--Hb_003147_050 Hb_005839_110--Hb_000061_300 Hb_003929_120 Hb_003929_120 Hb_005839_110--Hb_003929_120 Hb_001575_020 Hb_001575_020 Hb_005839_110--Hb_001575_020 Hb_000432_050 Hb_000432_050 Hb_005839_110--Hb_000432_050 Hb_000429_170 Hb_000429_170 Hb_005000_070--Hb_000429_170 Hb_007924_020 Hb_007924_020 Hb_005000_070--Hb_007924_020 Hb_000622_040 Hb_000622_040 Hb_005000_070--Hb_000622_040 Hb_005000_070--Hb_000061_300 Hb_002056_060 Hb_002056_060 Hb_005000_070--Hb_002056_060 Hb_000368_060 Hb_000368_060 Hb_005539_240--Hb_000368_060 Hb_001232_130 Hb_001232_130 Hb_005539_240--Hb_001232_130 Hb_008931_010 Hb_008931_010 Hb_005539_240--Hb_008931_010 Hb_005539_240--Hb_000061_300 Hb_005539_240--Hb_001575_020 Hb_001616_060 Hb_001616_060 Hb_005539_240--Hb_001616_060 Hb_168905_010 Hb_168905_010 Hb_000853_410--Hb_168905_010 Hb_001159_120 Hb_001159_120 Hb_000853_410--Hb_001159_120 Hb_000853_410--Hb_005000_070 Hb_000210_220 Hb_000210_220 Hb_000853_410--Hb_000210_220 Hb_061802_010 Hb_061802_010 Hb_000853_410--Hb_061802_010 Hb_009113_070 Hb_009113_070 Hb_000853_410--Hb_009113_070 Hb_000061_300--Hb_001575_020 Hb_000061_300--Hb_001616_060 Hb_003581_260 Hb_003581_260 Hb_000061_300--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000061_300--Hb_007382_150 Hb_000046_290 Hb_000046_290 Hb_000061_300--Hb_000046_290 Hb_002603_160 Hb_002603_160 Hb_000061_300--Hb_002603_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100045 0.0898995 0.125948 0 0.328451 0.0853554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.384641 0.483839 0.758468 0.073709 0.12014

CAGE analysis