Hb_000795_050

Information

Type -
Description -
Location Contig795: 207010-208064
Sequence    

Annotation

kegg
ID rcu:RCOM_0690990
description acetyl-CoA acetyltransferase, mitochondrial, putative (EC:2.3.1.9)
nr
ID KDO50952.1
description hypothetical protein CISIN_1g0154952mg, partial [Citrus sinensis]
swissprot
ID P45362
description Acetyl-CoA acetyltransferase (Fragment) OS=Peptoclostridium difficile GN=thi PE=3 SV=2
trembl
ID A0A067EIA2
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0154952mg PE=3 SV=1
Gene Ontology
ID GO:0005777
description acetyl- cytosolic 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000795_050 0.0 - - hypothetical protein CISIN_1g0154952mg, partial [Citrus sinensis]
2 Hb_002374_160 0.1047617912 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
3 Hb_004374_200 0.1061994389 - - putative GMP synthase [Oxybasis rubra]
4 Hb_001278_110 0.1189281131 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
5 Hb_000156_130 0.1228224853 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
6 Hb_000085_270 0.1272694617 - - PREDICTED: pirin-like protein [Malus domestica]
7 Hb_007101_100 0.1275887378 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
8 Hb_001477_130 0.1279453447 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
9 Hb_002685_190 0.1294805487 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
10 Hb_086639_070 0.1295785491 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
11 Hb_004440_050 0.1325174809 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
12 Hb_181288_010 0.1332545276 - - rac-GTP binding protein, putative [Ricinus communis]
13 Hb_019253_020 0.1336597074 - - PREDICTED: uncharacterized protein LOC105647727 [Jatropha curcas]
14 Hb_018133_060 0.1341706839 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
15 Hb_001248_050 0.1342696307 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
16 Hb_071130_030 0.13492476 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
17 Hb_000365_380 0.135056296 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002232_170 0.1374693952 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
19 Hb_005056_060 0.1375044266 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
20 Hb_022461_010 0.1385355824 - - -

Gene co-expression network

sample Hb_000795_050 Hb_000795_050 Hb_002374_160 Hb_002374_160 Hb_000795_050--Hb_002374_160 Hb_004374_200 Hb_004374_200 Hb_000795_050--Hb_004374_200 Hb_001278_110 Hb_001278_110 Hb_000795_050--Hb_001278_110 Hb_000156_130 Hb_000156_130 Hb_000795_050--Hb_000156_130 Hb_000085_270 Hb_000085_270 Hb_000795_050--Hb_000085_270 Hb_007101_100 Hb_007101_100 Hb_000795_050--Hb_007101_100 Hb_004128_190 Hb_004128_190 Hb_002374_160--Hb_004128_190 Hb_000245_130 Hb_000245_130 Hb_002374_160--Hb_000245_130 Hb_000398_180 Hb_000398_180 Hb_002374_160--Hb_000398_180 Hb_001454_140 Hb_001454_140 Hb_002374_160--Hb_001454_140 Hb_000720_120 Hb_000720_120 Hb_002374_160--Hb_000720_120 Hb_002232_170 Hb_002232_170 Hb_002374_160--Hb_002232_170 Hb_004374_200--Hb_007101_100 Hb_004374_200--Hb_001454_140 Hb_005686_110 Hb_005686_110 Hb_004374_200--Hb_005686_110 Hb_004374_200--Hb_002374_160 Hb_000620_080 Hb_000620_080 Hb_004374_200--Hb_000620_080 Hb_001124_210 Hb_001124_210 Hb_004374_200--Hb_001124_210 Hb_002685_190 Hb_002685_190 Hb_001278_110--Hb_002685_190 Hb_003266_050 Hb_003266_050 Hb_001278_110--Hb_003266_050 Hb_004297_070 Hb_004297_070 Hb_001278_110--Hb_004297_070 Hb_002284_090 Hb_002284_090 Hb_001278_110--Hb_002284_090 Hb_181288_010 Hb_181288_010 Hb_001278_110--Hb_181288_010 Hb_000300_610 Hb_000300_610 Hb_001278_110--Hb_000300_610 Hb_002307_030 Hb_002307_030 Hb_000156_130--Hb_002307_030 Hb_000156_130--Hb_002374_160 Hb_143813_010 Hb_143813_010 Hb_000156_130--Hb_143813_010 Hb_002374_490 Hb_002374_490 Hb_000156_130--Hb_002374_490 Hb_001477_130 Hb_001477_130 Hb_000156_130--Hb_001477_130 Hb_000156_130--Hb_001454_140 Hb_001248_050 Hb_001248_050 Hb_000085_270--Hb_001248_050 Hb_000483_350 Hb_000483_350 Hb_000085_270--Hb_000483_350 Hb_004109_200 Hb_004109_200 Hb_000085_270--Hb_004109_200 Hb_004221_010 Hb_004221_010 Hb_000085_270--Hb_004221_010 Hb_004055_010 Hb_004055_010 Hb_000085_270--Hb_004055_010 Hb_004920_040 Hb_004920_040 Hb_000085_270--Hb_004920_040 Hb_005063_040 Hb_005063_040 Hb_007101_100--Hb_005063_040 Hb_007101_100--Hb_001454_140 Hb_007101_100--Hb_002232_170 Hb_007101_100--Hb_002374_160 Hb_000963_190 Hb_000963_190 Hb_007101_100--Hb_000963_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.99746 3.11569 1.01615 1.31845 2.55415 7.10869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.22706 7.5071 2.28106 1.5165 1.99516

CAGE analysis