Hb_000297_050

Information

Type -
Description -
Location Contig297: 64927-70449
Sequence    

Annotation

kegg
ID rcu:RCOM_1259420
description transporter, putative
nr
ID KDP36196.1
description hypothetical protein JCGZ_08840 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08840 PE=4 SV=1
Gene Ontology
ID GO:0005773
description vacuolar protein sorting-associated protein 55 homolog isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_050 0.0 - - hypothetical protein JCGZ_08840 [Jatropha curcas]
2 Hb_008085_030 0.0768357164 - - PREDICTED: uncharacterized protein LOC105639414 [Jatropha curcas]
3 Hb_000221_220 0.0951944742 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
4 Hb_007426_230 0.0965758552 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
5 Hb_000172_370 0.0977140964 - - -
6 Hb_000665_240 0.0979129495 - - Vesicle-associated membrane protein, putative [Ricinus communis]
7 Hb_063134_010 0.1013578393 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
8 Hb_027472_180 0.1028432056 - - hypothetical protein L484_016229 [Morus notabilis]
9 Hb_007760_030 0.1107801101 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
10 Hb_003038_030 0.1118707572 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
11 Hb_007575_040 0.1121210171 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]
12 Hb_004195_160 0.1138080824 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
13 Hb_000417_180 0.1145389491 - - 60S ribosomal protein L11, putative [Ricinus communis]
14 Hb_002997_170 0.1148477317 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
15 Hb_148912_010 0.1148858343 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002006_020 0.1166223441 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
17 Hb_004440_090 0.1175185755 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
18 Hb_000928_240 0.11757123 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
19 Hb_000186_240 0.1181748208 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
20 Hb_118419_020 0.118303277 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]

Gene co-expression network

sample Hb_000297_050 Hb_000297_050 Hb_008085_030 Hb_008085_030 Hb_000297_050--Hb_008085_030 Hb_000221_220 Hb_000221_220 Hb_000297_050--Hb_000221_220 Hb_007426_230 Hb_007426_230 Hb_000297_050--Hb_007426_230 Hb_000172_370 Hb_000172_370 Hb_000297_050--Hb_000172_370 Hb_000665_240 Hb_000665_240 Hb_000297_050--Hb_000665_240 Hb_063134_010 Hb_063134_010 Hb_000297_050--Hb_063134_010 Hb_000395_170 Hb_000395_170 Hb_008085_030--Hb_000395_170 Hb_005754_060 Hb_005754_060 Hb_008085_030--Hb_005754_060 Hb_009048_040 Hb_009048_040 Hb_008085_030--Hb_009048_040 Hb_007317_210 Hb_007317_210 Hb_008085_030--Hb_007317_210 Hb_085781_010 Hb_085781_010 Hb_008085_030--Hb_085781_010 Hb_001828_090 Hb_001828_090 Hb_000221_220--Hb_001828_090 Hb_002603_100 Hb_002603_100 Hb_000221_220--Hb_002603_100 Hb_000221_220--Hb_007426_230 Hb_012762_050 Hb_012762_050 Hb_000221_220--Hb_012762_050 Hb_004195_160 Hb_004195_160 Hb_000221_220--Hb_004195_160 Hb_011571_020 Hb_011571_020 Hb_000221_220--Hb_011571_020 Hb_007426_230--Hb_004195_160 Hb_002097_110 Hb_002097_110 Hb_007426_230--Hb_002097_110 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_015001_020 Hb_015001_020 Hb_007426_230--Hb_015001_020 Hb_000398_180 Hb_000398_180 Hb_007426_230--Hb_000398_180 Hb_148912_010 Hb_148912_010 Hb_000172_370--Hb_148912_010 Hb_003005_020 Hb_003005_020 Hb_000172_370--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_000172_370--Hb_010436_070 Hb_003038_030 Hb_003038_030 Hb_000172_370--Hb_003038_030 Hb_118419_020 Hb_118419_020 Hb_000172_370--Hb_118419_020 Hb_000172_370--Hb_004195_160 Hb_000928_240 Hb_000928_240 Hb_000665_240--Hb_000928_240 Hb_000392_440 Hb_000392_440 Hb_000665_240--Hb_000392_440 Hb_000665_240--Hb_004440_090 Hb_011360_140 Hb_011360_140 Hb_000665_240--Hb_011360_140 Hb_000665_240--Hb_007426_230 Hb_000665_240--Hb_148912_010 Hb_007193_100 Hb_007193_100 Hb_063134_010--Hb_007193_100 Hb_029510_140 Hb_029510_140 Hb_063134_010--Hb_029510_140 Hb_063134_010--Hb_003005_020 Hb_000175_070 Hb_000175_070 Hb_063134_010--Hb_000175_070 Hb_063134_010--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_063134_010--Hb_000384_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7976 2.04795 5.12516 3.57136 18.4636 18.968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.65748 20.0135 16.2746 5.37169 2.517

CAGE analysis