Hb_008085_030

Information

Type -
Description -
Location Contig8085: 53169-61827
Sequence    

Annotation

kegg
ID pop:POPTR_0003s03710g
description POPTRDRAFT_553559; hypothetical protein
nr
ID XP_012078851.1
description PREDICTED: uncharacterized protein LOC105639414 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8L9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13382 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59126: 42713-53529 , PASA_asmbl_59128: 54430-54794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008085_030 0.0 - - PREDICTED: uncharacterized protein LOC105639414 [Jatropha curcas]
2 Hb_000297_050 0.0768357164 - - hypothetical protein JCGZ_08840 [Jatropha curcas]
3 Hb_000395_170 0.0907948593 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
4 Hb_005754_060 0.0966253494 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009048_040 0.0985727292 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
6 Hb_007317_210 0.1001739293 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
7 Hb_085781_010 0.1002403512 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
8 Hb_007575_040 0.1009965178 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]
9 Hb_168000_010 0.1016325878 - - Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
10 Hb_000172_370 0.1019430657 - - -
11 Hb_000057_040 0.1065877883 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_132835_010 0.1114153748 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
13 Hb_000186_240 0.1118664518 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
14 Hb_007426_230 0.1121988849 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
15 Hb_148912_010 0.1126502719 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003001_140 0.1127331114 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
17 Hb_000221_220 0.1129438006 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
18 Hb_004109_090 0.113073814 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000665_240 0.1133839928 - - Vesicle-associated membrane protein, putative [Ricinus communis]
20 Hb_011571_010 0.1134751196 - - Metal tolerance protein C4, putative [Ricinus communis]

Gene co-expression network

sample Hb_008085_030 Hb_008085_030 Hb_000297_050 Hb_000297_050 Hb_008085_030--Hb_000297_050 Hb_000395_170 Hb_000395_170 Hb_008085_030--Hb_000395_170 Hb_005754_060 Hb_005754_060 Hb_008085_030--Hb_005754_060 Hb_009048_040 Hb_009048_040 Hb_008085_030--Hb_009048_040 Hb_007317_210 Hb_007317_210 Hb_008085_030--Hb_007317_210 Hb_085781_010 Hb_085781_010 Hb_008085_030--Hb_085781_010 Hb_000221_220 Hb_000221_220 Hb_000297_050--Hb_000221_220 Hb_007426_230 Hb_007426_230 Hb_000297_050--Hb_007426_230 Hb_000172_370 Hb_000172_370 Hb_000297_050--Hb_000172_370 Hb_000665_240 Hb_000665_240 Hb_000297_050--Hb_000665_240 Hb_063134_010 Hb_063134_010 Hb_000297_050--Hb_063134_010 Hb_003175_010 Hb_003175_010 Hb_000395_170--Hb_003175_010 Hb_000926_280 Hb_000926_280 Hb_000395_170--Hb_000926_280 Hb_148912_010 Hb_148912_010 Hb_000395_170--Hb_148912_010 Hb_048937_040 Hb_048937_040 Hb_000395_170--Hb_048937_040 Hb_000089_220 Hb_000089_220 Hb_000395_170--Hb_000089_220 Hb_004109_090 Hb_004109_090 Hb_000395_170--Hb_004109_090 Hb_005754_060--Hb_009048_040 Hb_071736_010 Hb_071736_010 Hb_005754_060--Hb_071736_010 Hb_005883_050 Hb_005883_050 Hb_005754_060--Hb_005883_050 Hb_005754_060--Hb_000395_170 Hb_000023_140 Hb_000023_140 Hb_005754_060--Hb_000023_140 Hb_001454_210 Hb_001454_210 Hb_005754_060--Hb_001454_210 Hb_009048_040--Hb_004109_090 Hb_003195_070 Hb_003195_070 Hb_009048_040--Hb_003195_070 Hb_005489_110 Hb_005489_110 Hb_009048_040--Hb_005489_110 Hb_000080_190 Hb_000080_190 Hb_009048_040--Hb_000080_190 Hb_002506_020 Hb_002506_020 Hb_009048_040--Hb_002506_020 Hb_011571_010 Hb_011571_010 Hb_007317_210--Hb_011571_010 Hb_002496_030 Hb_002496_030 Hb_007317_210--Hb_002496_030 Hb_007951_050 Hb_007951_050 Hb_007317_210--Hb_007951_050 Hb_007317_210--Hb_004109_090 Hb_007317_210--Hb_000395_170 Hb_000170_210 Hb_000170_210 Hb_007317_210--Hb_000170_210 Hb_000796_220 Hb_000796_220 Hb_085781_010--Hb_000796_220 Hb_012799_180 Hb_012799_180 Hb_085781_010--Hb_012799_180 Hb_007632_220 Hb_007632_220 Hb_085781_010--Hb_007632_220 Hb_085781_010--Hb_007951_050 Hb_085781_010--Hb_009048_040 Hb_011673_030 Hb_011673_030 Hb_085781_010--Hb_011673_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.586484 0.136009 0.37203 0.225113 0.904016 1.04842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.475367 0.797827 1.03003 0.338424 0.208525

CAGE analysis